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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence
[AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATTATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCAAGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT-----AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCAAAACTCATATT-GCCAACTAACTGTATAGCTAGATTACCTGTATAACGAGAAACTTTGGTCCATG]
[+] EMBL AK108472 [AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATTATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCAAGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACTAGTGCAGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCAAAACTCATATT GCCAACTAACTGTATAGCTAGATTACCTGTATAACGAGA ]
[-] EMBL CB648509 [ AGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTAACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATATGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAAGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTT ]
[+] EMBL CB096928 [ AACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAGGCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAGAAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGATGATACGACAGCATAAAAAGGGCAACT AGGCATGCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCACAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACTCACCTTCTGATCTGCAGCTATATATATACACGTTCAGAAAATAGCTCCATGTAGTGTTTGTAGGTCATGCAGTTATACGTACAGGCCAGAAACTCAGAACGACATTCTGTAGAGAATAATTATCAGCCAGTGGCCTGGTAATGTACAGATTACACTGNTCANGTCTTTGGGTAGACGGGATANGCGCATCTTTGNTTAGCCAGATACACGNTTTGTAATCATNCACTATGTAACTGGTTTCATCTTTCAAAACTCATATTGGCCAACTAACTGGATAGCTAGATTACCTGNATAACGAGAAACTTTGGTCCATG]
consensusID : consensus_8712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 833 fasta sequence
[GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAGCATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATGATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCTGAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCAACTGCCTTGAAGGAAGTTGAATCAAACGAATTGGATTATAATGGTATTCTAGGTAAAAATGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATTTGTGCAGATTGAAAATAAAATGTCAGGGGATATGAAGGGAAGTGAAAAAGGGCCTGAAATTCTGGGTTATCAATGCAAGCATATGGTACAGCAGGCACTTGTGCTAACAAAGAAGGGCCTTTGGTATAAGCAAATGCTAGACACAAGACGGTCTCAACTCCGAAAAGCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTTGTTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAGAGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGTTGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATGGTTCAAGCATCT]
[+] EMBL CA764651 [GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAGCATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATGATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCTGAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCAACTGCCTTGAAGGAAGTTGAATCAAACGAATTGGATTATAATGGTATTCTAGGTAAAAATGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATTTGTGCAGATTGAAAATAAAATGTCAGGGGATATGAAGGGAAGTGAAAAAGGGCCTGAAATTCTGGGTTATCAATGCAAGCATATGGTACAGCAGGCACTTGTGCTAACAAAGAAGGGCCTTTGGTATAAGCAAATGCTAGACACAAGACGGTCTCAACTCCGAAAAGCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTTGTTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGTTGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAGAGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGTTGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATGGTTCAAGCATCT]
consensusID : consensus_8712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[GCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCTCACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTTTGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGACACTTCTGTAGAGAATAATTATCAGCCACGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCNAAACTCATATTGCCCAAAAAAAAA]
[+] EMBL BQ906246 [GCTCAAGAGTAGACTCATGAGGACCTACTGCCAGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCATAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAATTATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCTCACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTTTGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGACACTTCTGTAGAGAATAATTATCAGCCACGTGGCCTGGTAATGTACAGATTACACTGTTCAGGTCTTTGGGTAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGTAACTGTTTTCATCTTTCNAAACTCATATTGCCCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8712#0 AATGGTATTTTCACCAAAAATGAGCAAGAAAAGCAACTGGAGTGCATTTTAATATCTATT 60
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 ------------------------------------------------------------
consensus_8712#0 ATGAAGTTGTCAAAGGAATTTGTGGAGATCGAGCAAAAATTATCAGTAGAAAGAAGTGCA 120
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 ------------------------------------------------------------
consensus_8712#0 AGCAGGTCAGAGGATTTGAGTGATCATTGCAACCACATGGTCAGACAAGCCGTTGTACTA 180
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 ------------------------------------------------------------
consensus_8712#0 ACAAAAATAGGCCTTTGGTACAAACAAATGCTAGAAACAAGGCGTTCTGAGCTCCAGAAG 240
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 ------------------------------------------------------------
consensus_8712#0 GCTGAAGCCAAGGTTGTCATTTTGGGCGACAAGGTTAATTCACATTTAAACCTTCTTCAG 300
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 -GTTTAGCTAATGAAGAAAACCAGAGGTTAAAGGAGAAGTTGTCAAAACAAGAAAAGGAG 59
consensus_8712#0 AAGATATATGTAACTCTTGATCGCTACTCCCCTACATTACAGCAATATCCTGGGTTGCTA 360
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 CATGGCATCCAAAATAACCAGGACTCTCCTGAGTTAATCAAACAGGACAATGAGGAAATG 119
consensus_8712#0 GATGCTTTCTTGAAGACATGCAAGCTTGTTGCAGGTTTGAGAAGTAATCAGAACAAAGAT 420
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 ATACTCCGTGATATCGAGATGGAGCCTCATGTATCACCTAGGAGATCATATGCCATTTCT 179
consensus_8712#0 GATACGACAGCATAAAAAGGGCAACTAGGCATGCTCAAGAGTAGACTCATGAGGACCT-- 478
consensus_8712#2 --------------------------------GCTCAAGAGTAGACTCATGAGGACCT-- 26
consensus_8712#1 GAGCAGAATGCAGAGTATGAGGAGCTCATCAAACTGAAGCAAACTTTAGAGATTGCCTCA 239
** *** * * ** ***
consensus_8712#0 ACTGCC----AGGAGGGTACAACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCA 534
consensus_8712#2 ACTGCC----AGGAGGGTACNACTGACACACTGATATCCTGGCTCATCCGCTCATGTGCA 82
consensus_8712#1 ACTGCCTTGAAGGAAGTTGAATCAAACGAATTGG-ATTATAATGGTATTCTAGGTAAAAA 298
****** **** * * * ** * ** ** * * *
consensus_8712#0 TAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAAT 594
consensus_8712#2 TAACCAATTAGCCATGTGAAGCTCCAGTTGTAGATCAAGTGGAGGATTCTCAGACTGAAT 142
consensus_8712#1 TGAGCAAGAAAAGCAACTAGAATTCATTTTGGTATCCATTATGGATTTGTCAAAAGAATT 358
* * *** * * * ** ** *** * * * ** *** * * *
consensus_8712#0 TATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCAC-T 653
consensus_8712#2 TATCGATATCATAGGATGTTGATTGTTGATGCGTATTTCGAACCAGCTGAAGTAGCACCT 202
consensus_8712#1 TGTGCAGATT---GAAAATAAAATGTCAGGGGATATG--AAGGGAAGTGAAAAAGGGCCT 413
* * * ** * * * * *** * *** * * **** ** * *
consensus_8712#0 CACCTTCTGATATGCAGCTATATATATACAC-GTTCAGAAAATAGCTCCA-TGTAGTGTT 711
consensus_8712#2 CACCTTCTGATATGCAGCTATATATATACACCGTTCAGAAAATAGCTCCACTGTAGTGTT 262
consensus_8712#1 GAAATTCTGGGTTAT--CAATGCAAGCATATGGTACAGCAGGCACTTGTG--CTAACAAA 469
* ***** * * ** * * * ** *** * * * **
consensus_8712#0 TGTAGGTCA-TGCAGTTATACGTACAAGCCAGAAACTCAGAACGA---CA-TTCTGTAGA 766
consensus_8712#2 TGTAGGTCACTGCAGTTATACGTACAAGCCAGAAACTCAGAACGA---CACTTCTGTAGA 319
consensus_8712#1 GAAGGGCCTTTG---GTATAAGCAAATGCTAGACA--CAAGACGGTCTCAACTCCGAAAA 524
** * ** **** * * * ** *** * ** *** ** ** * * *
consensus_8712#0 GAATAATTATCAGCCA-GTGGCCT-GGTAATGTACAGATTACACTGTTCAGGTCTTTGGG 824
consensus_8712#2 GAATAATTATCAGCCACGTGGCCT-GGTAATGTACAGATTACACTGTTCAGGTCTTTGGG 378
consensus_8712#1 GCTGAAGCTGAGGTTTGACGTTTTAGGAAATAAGGTTAGCACACTTCTTAAGTCTT---G 581
* ** * * * ** *** * ***** * * ***** *
consensus_8712#0 TAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGT 884
consensus_8712#2 TAGACGGGATAGGCGCATCTTTGTTTAGCCAGATACACGTTTTGTAATCATCCACTATGT 438
consensus_8712#1 TTCAAAAGATATACGTGACTCTCGAGCATTACTCTCCAGTATTTCAGCAATATCCTGGGT 641
* * **** ** ** * * * ** ** * ** ** **
consensus_8712#0 AACTGTTTTCATCTTTCAAAACTCATA---TTGCCAACTAACTGTATAGCTAGATTACCT 941
consensus_8712#2 AACTGTTTTCATCTTTCNAAACTCATA---TTGCCCAAAAAAAAA--------------- 480
consensus_8712#1 TGCTAGATGCTTTCTTGAAGACATGCAAGCTTGNTGCAGGNTTAAGAAGTAAACAAAAAG 701
** * * * ** * ** * ***
consensus_8712#0 GTATAACGAGAAACTTTGGTCCATG----------------------------------- 966
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 AGGACCTTACAGGATACATCTTAAAGTTGGAGCAGCTAGATAATTTAGCAATATTTTAGT 761
consensus_8712#0 ------------------------------------------------------------
consensus_8712#2 ------------------------------------------------------------
consensus_8712#1 TGACAAAGGCTTTAGGATTTCTAGTAGGATAANTGATGNCATGGGGGGAGGAGCAACATG 821
consensus_8712#0 ------------
consensus_8712#2 ------------
consensus_8712#1 GTTCAAGCATCT 833
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||