Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8717 cluster # 8717       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8717#0 length = 986 sequences # 5  
consensusID : consensus_8717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 986
fasta sequence 
                              [TCCTCATCTAGGGTTTCCGCGTCGCCGCGGCCGCGAGTCGCCATGGATTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGGCTCCGGGGCGCCGTCCAACGGCGCCGCCGCGCCCAGATCCGAGGAGAAGGAGCGAAGCTCTCGCCGCCGGAGCGGCGGCGGCGGCGGCGGCGACGAAGAGCGCGACGATGGCGAGCGCAGATCCAAGCGCTCTCGCTCGGAGGAGAACCGCGACCGCGACAAGGACAAGGACCGGGACCGGCACCGCGACCGCGACAAGGACCGGGACCGGCACCGCAGCAGCCGGGAGCGTCGCGACCGCGACCGCGACCGAGACCGGGACGAGAAGGATAGGGAGAAGGAGAGGGACAAGGACAAGGAGAGGAGAAGCCGGGACCGCGAGAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGGGAGAGGGAGAAGGATAGAGAGCGGAGGAGCCGGAGCCGGTCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTGTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAGTTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACAGGTGATGGTTAAGCCATCAGAGGCTGAAAAGAATTTAGTTCAGTCAAATGCTTCTTCAAGTGGAGCAGCTTCACGTGGGGCAAGANAGTTGTATGTTGGAAATCTTCACTCAAATATTACTGAAGATCAATTGAGACAGGTCTTCGAACCGTTTGGTCAGGTGGAGCT]

[+] EMBL CB648241             [TCCTCATCTAGGGTTTCCGCGTCGCCGCGGCCGCGAGTCGCCATGGATTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGGCTCCGGGGCGCCGTCCAACGGCGCCGCCGCGCCCAGATCCGAGGAGAAGGAGCGAAGCTCTCGCCGCCGGAGCGGCGGCGGCGGCGGCGGCGACGAAGAGCGCGACGATGGCGAGCGCAGATCCAAGCGCTCTCGCTCGGAGGAGAACCGCGACCGCGACAAGGACAAGGACCGGGACCGGCACCGCGACCGCGACAAGGACCGGGACCGGCACCGCAGCAGCCGGGAGCGTCGCGACCGCGACCGCGACCGAGACCGGGACGAGAAGGATAGGGAGAAGGAGAGGGACAAGGACAAGGAGAGGAGAAGCCGGGACCGCGAGAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGGGAGAGGGAGAAGGATAGAGAGCGGAGGAGCCGGAGCCGGTCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTGTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAGTTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTGTCTGGCCAGCTGCTTCT                                                                                                                                                                                 ]
[+] EMBL CB648023             [TCCTCATCTAGGGTTTCCGCGTCGCCGCGGCCGCGAGTCGCCATGGATTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGGCTCCGGGGCGCCGTCCAACGGCGCCGCCGCGCCCAGATCCGAGGAGAAGGAGCGAAGCTCTCGCCGCCGGAGCGGCGGCGGCGGCGGCGGCGACGAAGAGCGCGACGATGGCGAGCGCAGATCCAAGCGCTCTCGCTCGGAGGAGAACCGCGACCGCGACAAGGACAAGGACCGGGACCGGCACCGCGACCGCGACAAGGACCGGGACCGGCACCGCAGCAGCCGGGAGCGTCGCGACCGCGACCGCGACCGAGACCGGGACGAGAAGGATAGGGAGAAGGAGAGGGACAAGGACAAGGAGAGGAGAAGCCGGGACCGCGAGAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGGGAGAGGGAGAAGGATAGAGAGCGGAGGAGCCGGAGCCGGTCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTGTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAGTTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTTTCTG                                                                                                                                                                                              ]
[+] EMBL CB640469             [                                 CGAGTCGCCATGGATTTCGACGAGTACGACTACTTGGAGAAGACGGTGGAGGGCTCCGGGGCGCCGTCCAACGGCGCCGCCGCGCCCATATCCGAGGAGAAGGAGCGAAGCTCTCGCCGCCGGAGCGGCGGCGGCGGCGGCGGCGACGAAGAGCGCGACGATGGCGAGCGCAGATCCAAGCGCTCTCGCTCGGAGGAGAACCGCGACCGCGACAAGGACAAGGACCGGGACCGGCACCGCGACCGCGACAAGGACCGGGACCGGCACCGCAGCAACCGGGATCGTCGCGACCGCGACCGCGACCGAGACCGGGACGAGAATGATAGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB638032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGAGGGAGAAGGATAGAGAGCGGAGGAGCCGGAGCCGGTCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTGTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAGTTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACAGGTGATGGTTAAGCCATCAGAGGCTGAAAAGAATTTAGTTCAGTCAAATGCTTCTTCAAGTGGAGCAGCTTCACGTGGGGCAAGANAGTTGTATGTTGGAAATCT                                                               ]
[+] EMBL CK085109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGGTCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTACCGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAACGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTGTACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAACTCGCGCCGTTCTAAAGGAGTGGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATGGCAATAGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACAGGTGATGGTTAAGCCATCAGAGGCTGAAAAGAATTTAGTTCAGTCAAATGCTTCTTCAAGTGGAGCAGCTTCAGGTGGGGCAAGAAAGTTGTATGTTGGAAATCTTCACTCAAATATTACTGAAGATCAATTGAGACAGGTCTTCGAACCGTTTGGTCAGGTGGAGCT]




>consensus_8717#0
TCCTCATCTAGGGTTTCCGCGTCGCCGCGGCCGCGAGTCGCCATGGATTTCGACGAGTAC
GACTACTTGGAGAAGACGGTGGAGGGCTCCGGGGCGCCGTCCAACGGCGCCGCCGCGCCC
AGATCCGAGGAGAAGGAGCGAAGCTCTCGCCGCCGGAGCGGCGGCGGCGGCGGCGGCGAC
GAAGAGCGCGACGATGGCGAGCGCAGATCCAAGCGCTCTCGCTCGGAGGAGAACCGCGAC
CGCGACAAGGACAAGGACCGGGACCGGCACCGCGACCGCGACAAGGACCGGGACCGGCAC
CGCAGCAGCCGGGAGCGTCGCGACCGCGACCGCGACCGAGACCGGGACGAGAAGGATAGG
GAGAAGGAGAGGGACAAGGACAAGGAGAGGAGAAGCCGGGACCGCGAGAAGGAGAAGGAG
AAGGAGAAGGAGAGGGAGAGGGAGAGGGAGAAGGATAGAGAGCGGAGGAGCCGGAGCCGG
TCCGAGCGCCGCCGCGACGACGAAGAACGTGACCGCGAACGCTACCGCGAGCGAGACTAC
CGTGACCGCGATGTCAGACGTAGGAAAGAAGAGGCTGGAGAGCCTGAAGCAGATCCAGAA
CGAGATCAAAGGACAGTATTTGCCTACCAGTTATCTCTGAAGGCGGATGAAAGAGACGTG
TACGAATTCTTTTCAAGGGCTGGGAAGGTCCGGGATGTTCGCCTCATCATGGACCGAAAC
TCGCGCCGTTCTAAAGGAGTTGGGTACATCGAATTCTATGATGTTATGTCTGTACCAATG
GCAATAGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACAGGTGATGGTTAAGCCATCAGAG
GCTGAAAAGAATTTAGTTCAGTCAAATGCTTCTTCAAGTGGAGCAGCTTCACGTGGGGCA
AGANAGTTGTATGTTGGAAATCTTCACTCAAATATTACTGAAGATCAATTGAGACAGGTC
TTCGAACCGTTTGGTCAGGTGGAGCT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)