cluster # 8724

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Oryza sativa
cluster # 8724 cluster # 8724 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8724#0 length = 186 sequences # 4

consensus_8724#1 length = 126 sequences # 1

consensusID : consensus_8724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 186
fasta sequence

                              [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA]

[+] EMBL CF340564             [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA]
[+] EMBL CF340733             [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA]
[+] EMBL CF339400             [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA]
[+] EMBL CF340731             [                                  AACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA]




>consensus_8724#0
GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAA
GGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCG
GCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCG
CAGGTA

consensusID : consensus_8724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGCACAAGTA]

[+] EMBL CF340446             [GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGCACAAGTA]




>consensus_8724#1
GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGG
CACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGCA
CAAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8724#0      GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAA 60
consensus_8724#1      ------------------------------------------------------------
                                                                                  

consensus_8724#0      GGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCG 120
consensus_8724#1      -GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCG 59
                       **** ********* ***** **************************************

consensus_8724#0      GCACGACGCTGGTGGC-GACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGC 179
consensus_8724#1      GCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGC 119
                      ********** ***** ***** ***************************** *******

consensus_8724#0      GCAGGTA 186
consensus_8724#1      ACAAGTA 126
                       ** ***