These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCAGCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAACAGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAACAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACTTACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAGCTGACAGACTGGCAGCAATGTTGAGTGGTGGTGCTACTTTGATGCAGACTGCAAGCTGCAAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTGACCCTGAACTGACTATGAGTGGCTGCCCAGGGAGCATTGCCAACTGTTGGGTGGTGTGCTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAAGTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTAGCTAAAAAAAAAA] [+] EMBL BI798382 [TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCAGCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAACAGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAACAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACTTACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAGCTGACAGACTGGCAGCAATGTTGAGTGGTGGTGCTACTTTGATGCAGACTGCAAGCTGCAAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTGACCCTGAACTGACTATGAGTGGCTGCCCAGGGAGCATTGCCAACTGTTGGGTGGTGTGCTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAAGTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTAGCTAAAAAAAAAA] consensusID : consensus_873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [ATTGATTCTTAAGCACATTATAGCATATGCAACCCCCTTCTGCAACCACTACGTTTCAATTGATAAACACCAAGTCATGCACACAGTGTTCCAACAGCTCAGTCTGGTACCACAACAATCTCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGGCAACAGCTACAAACTGCAGCATTTGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCTCAAGCCCAACTCTGTTGGACCTGTGCAACTTGCCATCCATGATGTGGGTGATGCTGACCCTGAACTGACTGATGAGTGCTGCCCAGGAGCATTGCCCCTGTGTTGGGTGGTGTGCTGGTGACTGGATATTGTAACAATGATGAATGAGTTGCGTGATGGTTAAAAATGAAAGTGCATACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTAGCTAATTACC] [+] EMBL BI802051 [ATTGATTCTTAAGCACATTATAGCATATGCAACCCCCTTCTGCAACCACTACGTTTCAATTGATAAACACCAAGTCATGCACACAGTGTTCCAACAGCTCAGTCTGGTACCACAACAATCTCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGGCAACAGCTACAAACTGCAGCATTTGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCTCAAGCCCAACTCTGTTGGACCTGTGCAACTTGCCATCCATGATGTGGGTGATGCTGACCCTGAACTGACTGATGAGTGCTGCCCAGGAGCATTGCCCCTGTGTTGGGTGGTGTGCTGGTGACTGGATATTGTAACAATGATGAATGAGTTGCGTGATGGTTAAAAATGAAAGTGCATACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTAGCTAATTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_873#0 TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCA 60 consensus_873#1 ------------------------------------------------------------ consensus_873#0 GCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAAC 120 consensus_873#1 -----------------------------------------ATTGATTCT-TAAGC--AC 16 * **** **** ** consensus_873#0 AGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAA 180 consensus_873#1 ATTATAGCATAT---GCAACCCCCTTCT--GCAACCACT--ACGTTTCAATT--GATAAA 67 * ********* *********** * ******* ********* * ****** consensus_873#0 CAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACT 240 consensus_873#1 CA--CCAAGT-CATGCA--CACAGTGTT---CCAA--CAGCT-CAGTCTG-----GTACC 111 ** ****** ****** ***** * **** **** *** *** * ** consensus_873#0 TACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAG 300 consensus_873#1 -ACAACAATCTCACT-ACCAGGCCATT-AGTATT--GTTCAAGCGATTG-TGGCAA-CAG 164 *** **** *********** *** * ************* ****** *** consensus_873#0 CTGACAGACTGGCAGCAATGTTGAGTGG-TGGTGCTACTTTGATGCAGACTGCAAGCTGC 359 consensus_873#1 CT-ACAAACTG-CAGCATT--TGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCT-C 219 ** *** **** ***** * ******* **** *** ** ************ * consensus_873#0 AAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTG 419 consensus_873#1 AAGCCCAACTC---TGTTGGACCTGTGCAACTTGCCAT-CCATGATG-TGGGTGATGCTG 274 ******** ** ******************** ******** ************ consensus_873#0 ACCCTGAACTGACT-ATGAGTGGCTGCCCAGGGAGCATTGCCAAC-TGTTGGGTGGTGTG 477 consensus_873#1 ACCCTGAACTGACTGATGAGTG-CTGCCCAGG-AGCATTGCCCCTGTGTTGGGTGGTGTG 332 ************** ******* ********* ********* ************** consensus_873#0 CTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAA 537 consensus_873#1 CTGGTGACTGGA-TATTGT-AACAATGATGAATGAGTTGCGTGATGGTT-AAAAATGAAA 389 ***** ***** * * ** ***************************** ********** consensus_873#0 GTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAA 597 consensus_873#1 GTGCAT-ACAT-CAT-CATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAA 446 ****** **** *** ******************************************** consensus_873#0 ATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTA 657 consensus_873#1 ATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTA 506 ************************************************ *********** consensus_873#0 GCTAAAAAAAAAA 670 consensus_873#1 GCTAATTACC--- 516 ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||