cluster # 8731

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Oryza sativa
cluster # 8731 cluster # 8731 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8731#0 length = 650 sequences # 4

consensus_8731#1 length = 220 sequences # 1

consensusID : consensus_8731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 650
fasta sequence

                              [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC]

[+] EMBL CF340392             [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC]
[+] EMBL CF339861             [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTNTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATA                                                             ]
[+] EMBL CF339115             [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAA                                                                                        ]
[+] EMBL CF339301             [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACTCTAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_8731#0
GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGG
CGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAG
ATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGT
TTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGAT
GAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTC
AACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTC
TTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGG
AACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTAC
ACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCC
GTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTC
CGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC

consensusID : consensus_8731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTCNNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN]

[+] EMBL CF196457             [CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTCNNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN]




>consensus_8731#1
CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAG
NANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATC
GACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTCNNGGGGTNNNNT
GNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8731#0      GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGG 60
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      CGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAG 120
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      ATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGT 180
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGAT 240
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      GAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTC 300
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      AACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTC 360
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGG 420
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      AACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTAC 480
consensus_8731#1      ------------CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTAC 48
                                  **  ********************************************

consensus_8731#0      ACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCC 540
consensus_8731#1      ACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCC 108
                      ************ * *********************************************

consensus_8731#0      GTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTC 600
consensus_8731#1      GTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTC 168
                      **************************** *   ************      * **  ***

consensus_8731#0      CGGGG-TTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC- 650
consensus_8731#1      NNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN 220
                        *** *    **   * *********************      *****