Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8742 cluster # 8742       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8742#0 length = 1940 sequences # 1  
consensus_8742#1 length = 1694 sequences # 4  

consensusID : consensus_8742#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1940
fasta sequence
                              [ACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCGTTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGAGAAAAACCCAATTATCATCCAACTACTCTCTTCGTTTCATATTATAAATCGTTTAAACTTTTTTTTAAGTTAAACTTGTTTTAAAAAATTTTGATCATCAAATGTATATAAAAATATAGTAATATTTATAGCACCAATTTGCACTACATTCCCAGTGTCCTGCAACCAAATTGATAGAGAGATATTCGCGGCAGCCACGACCATCACCCTATGAGATAGAAAGACGGCGAGTTTCTGCACTCGCACAGGCTTGAAAACAAGATTCCTAAGACAATGGCACCGGCCATCTACGCATCTTCAAGGTGAAAGAATCAAATAGTTTGCGAGGCCCTCTCCTCTAACACTTTGATTCGTGACATCTGACTGCTACAAATCACAACAGTAGATCACCTAAGTCAGTATGTCGAGCTATGGACCATGATCCAGAGAATAGGCCCCTTAGGATACTAGAGAGACACCATCACTTAGAAGTTTACAGCAAATGGTGAATAGTCGGCAAAATCGGCTTATCAGCTACAATTCCTATGTGCAGTAGGAACGGTGTTCAATCAAACAATTTGGAAATGTTAGGCGCCCCTAAAGTGCAAATTTTTCATATAGTTGGTCATCCAAAATAGGGTGTGGACGGCTGATAGGCTATAGAAGAGAGGTTAGCAAAACCAAAGAGTCTGCCCCTTCTATAGAGTATCACAGGAAACGACAATCCATCTTATCGCAAAATGCAGGCTCTCTATAAGGATTTAGACAGCCATACAACATTGGGCGAGCATAGACCTCAAAATACAAGATTGGGACGCTTGCGCTTCGATGGAAGAATGGTGGAAGAGGGTTCTTCACACACCGCACATCCCCAAAGGACCTTTAAAATCCCTGATTATCCTGGTGGGTTGGGAGCTCTGGTGTGAGAGAAACACTAGGATATTCCGCCACGTGGCTACCACCCTGACAACCATCATCGCTAAAATCAAAGAAGAGGGGTTGGCCTGGATCAAAGTGGGATCAAAGTGGGAGCCGCAAAAGCTCGTTGAGTTAACTTCGTTGGAAGAACCCTATAGTTTCTCCTTCTGTGGGCTCTTTTTTTTTATGGCAGGCCCTGTAAATAACTCTTTTTTTGGTTGTTTGTTTTTTCTCCTACTCTATCAATATATGCAAGGTAAAGCTTTCGTCTTTTTTTTTAAAAAAAAAGTGCACTATATCTAACAATTCATAAATTTAGTTAAAACTAAAGTGACTTAAAAGTTAAAAAAACTAATAATATGAAACGGAGGTAAGTAGTTAGTTATTTGATTAACTAATTACATGACTGACAGGTGATCGTCATCGGGTTCTCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGTAATTAAGCTGCTCGATCACTGACAGTGACAGAGCTTGATGAATTCGCTGATTAAATCATTGGTCGATTAGTAAGCAAAATTTCAGGATTCGGACTCGCTAATCGAGCGACTTAATCCATCCAGGGTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACCGTGCAGGT]

[+] EMBL AK071452             [ACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCGTTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGAGAAAAACCCAATTATCATCCAACTACTCTCTTCGTTTCATATTATAAATCGTTTAAACTTTTTTTTAAGTTAAACTTGTTTTAAAAAATTTTGATCATCAAATGTATATAAAAATATAGTAATATTTATAGCACCAATTTGCACTACATTCCCAGTGTCCTGCAACCAAATTGATAGAGAGATATTCGCGGCAGCCACGACCATCACCCTATGAGATAGAAAGACGGCGAGTTTCTGCACTCGCACAGGCTTGAAAACAAGATTCCTAAGACAATGGCACCGGCCATCTACGCATCTTCAAGGTGAAAGAATCAAATAGTTTGCGAGGCCCTCTCCTCTAACACTTTGATTCGTGACATCTGACTGCTACAAATCACAACAGTAGATCACCTAAGTCAGTATGTCGAGCTATGGACCATGATCCAGAGAATAGGCCCCTTAGGATACTAGAGAGACACCATCACTTAGAAGTTTACAGCAAATGGTGAATAGTCGGCAAAATCGGCTTATCAGCTACAATTCCTATGTGCAGTAGGAACGGTGTTCAATCAAACAATTTGGAAATGTTAGGCGCCCCTAAAGTGCAAATTTTTCATATAGTTGGTCATCCAAAATAGGGTGTGGACGGCTGATAGGCTATAGAAGAGAGGTTAGCAAAACCAAAGAGTCTGCCCCTTCTATAGAGTATCACAGGAAACGACAATCCATCTTATCGCAAAATGCAGGCTCTCTATAAGGATTTAGACAGCCATACAACATTGGGCGAGCATAGACCTCAAAATACAAGATTGGGACGCTTGCGCTTCGATGGAAGAATGGTGGAAGAGGGTTCTTCACACACCGCACATCCCCAAAGGACCTTTAAAATCCCTGATTATCCTGGTGGGTTGGGAGCTCTGGTGTGAGAGAAACACTAGGATATTCCGCCACGTGGCTACCACCCTGACAACCATCATCGCTAAAATCAAAGAAGAGGGGTTGGCCTGGATCAAAGTGGGATCAAAGTGGGAGCCGCAAAAGCTCGTTGAGTTAACTTCGTTGGAAGAACCCTATAGTTTCTCCTTCTGTGGGCTCTTTTTTTTTATGGCAGGCCCTGTAAATAACTCTTTTTTTGGTTGTTTGTTTTTTCTCCTACTCTATCAATATATGCAAGGTAAAGCTTTCGTCTTTTTTTTTAAAAAAAAAGTGCACTATATCTAACAATTCATAAATTTAGTTAAAACTAAAGTGACTTAAAAGTTAAAAAAACTAATAATATGAAACGGAGGTAAGTAGTTAGTTATTTGATTAACTAATTACATGACTGACAGGTGATCGTCATCGGGTTCTCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGTAATTAAGCTGCTCGATCACTGACAGTGACAGAGCTTGATGAATTCGCTGATTAAATCATTGGTCGATTAGTAAGCAAAATTTCAGGATTCGGACTCGCTAATCGAGCGACTTAATCCATCCAGGGTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACCGTGCAGGT]


>consensus_8742#0 ACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGG CGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCAT GGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGT TCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGC TGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGG AAGACGTAGACCGTTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGAGAAAAAC CCAATTATCATCCAACTACTCTCTTCGTTTCATATTATAAATCGTTTAAACTTTTTTTTA AGTTAAACTTGTTTTAAAAAATTTTGATCATCAAATGTATATAAAAATATAGTAATATTT ATAGCACCAATTTGCACTACATTCCCAGTGTCCTGCAACCAAATTGATAGAGAGATATTC GCGGCAGCCACGACCATCACCCTATGAGATAGAAAGACGGCGAGTTTCTGCACTCGCACA GGCTTGAAAACAAGATTCCTAAGACAATGGCACCGGCCATCTACGCATCTTCAAGGTGAA AGAATCAAATAGTTTGCGAGGCCCTCTCCTCTAACACTTTGATTCGTGACATCTGACTGC TACAAATCACAACAGTAGATCACCTAAGTCAGTATGTCGAGCTATGGACCATGATCCAGA GAATAGGCCCCTTAGGATACTAGAGAGACACCATCACTTAGAAGTTTACAGCAAATGGTG AATAGTCGGCAAAATCGGCTTATCAGCTACAATTCCTATGTGCAGTAGGAACGGTGTTCA ATCAAACAATTTGGAAATGTTAGGCGCCCCTAAAGTGCAAATTTTTCATATAGTTGGTCA TCCAAAATAGGGTGTGGACGGCTGATAGGCTATAGAAGAGAGGTTAGCAAAACCAAAGAG TCTGCCCCTTCTATAGAGTATCACAGGAAACGACAATCCATCTTATCGCAAAATGCAGGC TCTCTATAAGGATTTAGACAGCCATACAACATTGGGCGAGCATAGACCTCAAAATACAAG ATTGGGACGCTTGCGCTTCGATGGAAGAATGGTGGAAGAGGGTTCTTCACACACCGCACA TCCCCAAAGGACCTTTAAAATCCCTGATTATCCTGGTGGGTTGGGAGCTCTGGTGTGAGA GAAACACTAGGATATTCCGCCACGTGGCTACCACCCTGACAACCATCATCGCTAAAATCA AAGAAGAGGGGTTGGCCTGGATCAAAGTGGGATCAAAGTGGGAGCCGCAAAAGCTCGTTG AGTTAACTTCGTTGGAAGAACCCTATAGTTTCTCCTTCTGTGGGCTCTTTTTTTTTATGG CAGGCCCTGTAAATAACTCTTTTTTTGGTTGTTTGTTTTTTCTCCTACTCTATCAATATA TGCAAGGTAAAGCTTTCGTCTTTTTTTTTAAAAAAAAAGTGCACTATATCTAACAATTCA TAAATTTAGTTAAAACTAAAGTGACTTAAAAGTTAAAAAAACTAATAATATGAAACGGAG GTAAGTAGTTAGTTATTTGATTAACTAATTACATGACTGACAGGTGATCGTCATCGGGTT CTCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGTAATTAAGCTG CTCGATCACTGACAGTGACAGAGCTTGATGAATTCGCTGATTAAATCATTGGTCGATTAG TAAGCAAAATTTCAGGATTCGGACTCGCTAATCGAGCGACTTAATCCATCCAGGGTTTAC AGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTC TCCAACAACACCGTGCAGGT



consensusID : consensus_8742#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1694
fasta sequence
                              [CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCGTTCATCCTCACT-GGATGCATAATCATCTGCATATCTGTGATCGTCATCGGGTTC-TCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGGTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACCGTGCAGGGTCCAGCTCGCGCTCTGATGGCCGATTTGTCAGGTCGGCATGGCCCAAGCGCGGCCAACGCGATCTTCTGTTCTTGGATGGCATTAGGCAACATCCTTGGCTACTCCTCCGGATCCACCAATGACTGGCACAAGTGGTTTCCCTTTCTCATGACCAGGGCTTGCTGCGAGGCCTGCGCGAATCTCAAAGCGGCCTTCTTGGTTGCAGTGGTGTTTTTGGGGTTGTCGACGGCGGTGACGATGGTGTTTGCGAGGGAGGTGGCGCTGGACCCAGTGGCGGCGGCGAAGCGGAACGAGGGTGAGGCGTCGGGGCTCCTCGCCGTGTTCAAGGGGATGAAGAACCTCCCCGTCGGGATGCCGTCGGTGCTTATCGTCACCGGCCTCACCTGGCTCTCGTGGTTCCCCTTCATCCTCTTCGACACCGACTGGATGGGCCGCGAGATCTACCATGGCCGCCCGGACGGCTCCCCCGCCGAGGTCACCGCCTTCCAAGAGGGTGTCCGCCAAGGCGCCTTCGGCCTCCTCCTTAACTCGATCGTGCTGGGCATCAGCTCGTTCCTGATCGAGCCGATGTGCCGTCGGCTGGGCGCCCGCGCGGTGTGGGTGATGAGCAGCGCCGTCGTGTGCGTCGCCATGGCGGCCGTCTCCGTGCTCAGCGCGTGGTCGCTCGGCGACTTCGGCGGCTCGGTGCAGGACGCAGCGCGGGCGCCGGCGGAGGAGGGCGGCGTCAGGGCGTCG-GCGCTGGCGCTCTTCGTCTTCCTCGGCCTCCCCTTCGCCGTCCTCTGCAGCGTCCCGTTCGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGCGGGCAGGGCCTCTGCACCGGCGTCCTCAACATCTCCATCGTCGTGCCGCAGATGGCCATCGCCCTCGGCGCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCCATGGCGTCCGTGTTCGCCGCCGCGGCCGCCGCCGCCGGCGTCGTCTTGCTGCCCAAGGTCTCCGTCCGCTCCGTCAGCATGGCCGGCGGCCACTGATCACTACTAGTCTATCACCCTTTTTTTTTCCGTGGTTTTAAATCTCCCGCTATAGCTGCTGCTATCTCCAGTTAGAGCGGGTACTATAGCAGGCTATA]

[+] EMBL AB071809             [CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCGTTCATCCTCACT GGATGCATAATCATCTGCATATCTGTGATCGTCATCGGGTTC TCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGGTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACCGTGCAGGGTCCAGCTCGCGCTCTGATGGCCGATTTGTCAGGTCGGCATGGCCCAAGCGCGGCCAACGCGATCTTCTGTTCTTGGATGGCATTAGGCAACATCCTTGGCTACTCCTCCGGATCCACCAATGACTGGCACAAGTGGTTTCCCTTTCTCATGACCAGGGCTTGCTGCGAGGCCTGCGCGAATCTCAAAGCGGCCTTCTTGGTTGCAGTGGTGTTTTTGGGGTTGTCGACGGCGGTGACGATGGTGTTTGCGAGGGAGGTGGCGCTGGACCCAGTGGCGGCGGCGAAGCGGAACGAGGGTGAGGCGTCGGGGCTCCTCGCCGTGTTCAAGGGGATGAAGAACCTCCCCGTCGGGATGCCGTCGGTGCTTATCGTCACCGGCCTCACCTGGCTCTCGTGGTTCCCCTTCATCCTCTTCGACACCGACTGGATGGGCCGCGAGATCTACCATGGCCGCCCGGACGGCTCCCCCGCCGAGGTCACCGCCTTCCAAGAGGGTGTCCGCCAAGGCGCCTTCGGCCTCCTCCTTAACTCGATCGTGCTGGGCATCAGCTCGTTCCTGATCGAGCCGATGTGCCGTCGGCTGGGCGCCCGCGCGGTGTGGGTGATGAGCAGCGCCGTCGTGTGCGTCGCCATGGCGGCCGTCTCCGTGCTCAGCGCGTGGTCGCTCGGCGACTTCGGCGGCTCGGTGCAGGACGCAGCGCGGGCGCCGGCGGAGGAGGGCGGCGTCAGGGCGTCG GCGCTGGCGCTCTTCGTCTTCCTCGGCCTCCCCTTCGCCGTCCTCTGCAGCGTCCCGTTCGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGCGGGCAGGGCCTCTGCACCGGCGTCCTCAACATCTCCATCGTCGTGCCGCAGATGGCCATCGCCCTCGGCGCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCCATGGCGTCCGTGTTCGCCGCCGCGGCCGCCGCCGCCGGCGTCGTCTTGCTGCCCAAGGTCTCCGTCCGCTCCGTCAGCATGGCCGGCGGCCACTGATCACTACTAGTCTATCACCCTTTTTTTTTCCGTGGTTTTAAATCTCCCGCTATAGCTGCTGCTATCTCCAGTTAGAGCGGGTACTATAGCAGGCTATA]
[+] EMBL AU063776             [CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGCGTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCGTTCATCCTCACTGGGATGCATAATCATCTGCATATCTGTGATCGTCATCGGGTTC TCCTCGGACATCGGCTACGCTCTCGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU065037             [CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATATTTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGCAAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGG GTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGAATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTTCAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGT GACCGTTCATCCTAACT NGATGCATAATCATCTGCATATCTGTGATCGTNATCGGGTTCTTCCTCGGCAATCGGTTAaggtnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU163425             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGCCATGGCGGCCGTCTCCGTGCTCAGCGCGTGGTCGCTCGGCGACTTCGGCGGCTCGGTGCAGGACGCAGCGCGGGCGCCGGCGGAGGAGGGCGGCGTCAGGGCGTCGNGCGNTGGCGCTCTTCGTCTTCCTCGGCCTCCCCTTCGCCGTCCTCTGCAGCGTCCCGTTCGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGCGGGCAGGGCCTCTGCACCGGCGTCCTCAACATCTCCATCGTCGTGCCGCAGATGGCCATCGCCCTCGGCGCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCCATGGCGTCCGT                                                                                                                                                                                       ]


>consensus_8742#1 CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATAT TTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGC AAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGC GTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGA ATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTT CAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCG TTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGATCGTCATCGGGTTCTCCTCG GACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGGTTTACAGGGGTCCTCGT TACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACC GTGCAGGGTCCAGCTCGCGCTCTGATGGCCGATTTGTCAGGTCGGCATGGCCCAAGCGCG GCCAACGCGATCTTCTGTTCTTGGATGGCATTAGGCAACATCCTTGGCTACTCCTCCGGA TCCACCAATGACTGGCACAAGTGGTTTCCCTTTCTCATGACCAGGGCTTGCTGCGAGGCC TGCGCGAATCTCAAAGCGGCCTTCTTGGTTGCAGTGGTGTTTTTGGGGTTGTCGACGGCG GTGACGATGGTGTTTGCGAGGGAGGTGGCGCTGGACCCAGTGGCGGCGGCGAAGCGGAAC GAGGGTGAGGCGTCGGGGCTCCTCGCCGTGTTCAAGGGGATGAAGAACCTCCCCGTCGGG ATGCCGTCGGTGCTTATCGTCACCGGCCTCACCTGGCTCTCGTGGTTCCCCTTCATCCTC TTCGACACCGACTGGATGGGCCGCGAGATCTACCATGGCCGCCCGGACGGCTCCCCCGCC GAGGTCACCGCCTTCCAAGAGGGTGTCCGCCAAGGCGCCTTCGGCCTCCTCCTTAACTCG ATCGTGCTGGGCATCAGCTCGTTCCTGATCGAGCCGATGTGCCGTCGGCTGGGCGCCCGC GCGGTGTGGGTGATGAGCAGCGCCGTCGTGTGCGTCGCCATGGCGGCCGTCTCCGTGCTC AGCGCGTGGTCGCTCGGCGACTTCGGCGGCTCGGTGCAGGACGCAGCGCGGGCGCCGGCG GAGGAGGGCGGCGTCAGGGCGTCGGCGCTGGCGCTCTTCGTCTTCCTCGGCCTCCCCTTC GCCGTCCTCTGCAGCGTCCCGTTCGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGC GGGCAGGGCCTCTGCACCGGCGTCCTCAACATCTCCATCGTCGTGCCGCAGATGGCCATC GCCCTCGGCGCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCC ATGGCGTCCGTGTTCGCCGCCGCGGCCGCCGCCGCCGGCGTCGTCTTGCTGCCCAAGGTC TCCGTCCGCTCCGTCAGCATGGCCGGCGGCCACTGATCACTACTAGTCTATCACCCTTTT TTTTTCCGTGGTTTTAAATCTCCCGCTATAGCTGCTGCTATCTCCAGTTAGAGCGGGTAC TATAGCAGGCTATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8742#0      -----------------------------------------------ACGTATAGGATAT 13
consensus_8742#1      CTTGGGATATAACTAGCTTAGCTATAGCTCTAGCTAAATAGGTTCGTACGTATAGGATAT 60
                                                                     *************

consensus_8742#0      TTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGC 73
consensus_8742#1      TTGATCCATTGATCGATGGCCGTCGACATGGAGCTCGACGGCGGTGGCGACGGCAAGGGC 120
                      ************************************************************

consensus_8742#0      AAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGC 133
consensus_8742#1      AAAGCCCCGCCGCAGATAAGCCTGTCGGGGCTATTCCTTGCGTGCATGGTCGCCGGTGGC 180
                      ************************************************************

consensus_8742#0      GTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGA 193
consensus_8742#1      GTGCAGTACGGCTGGGCGCTGCAGCTCTCTCTCCTCACCCCGTACGTTCAGACATTGGGA 240
                      ************************************************************

consensus_8742#0      ATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTT 253
consensus_8742#1      ATTCCTCATGCACTCACTTCAGTTATGTGGCTCTGTGGCCCTATTGCTGGCTTAATTGTT 300
                      ************************************************************

consensus_8742#0      CAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCG 313
consensus_8742#1      CAGCCATGCGTCGGCCTGTACAGTGACAAGTGCACATCCAGCCTTGGAAGACGTAGACCG 360
                      ************************************************************

consensus_8742#0      TTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGAGAAAAACCCAATTATCATCC 373
consensus_8742#1      TTCATCCTCACTGGATGCATAATCATCTGCATATCTGTGATCGTCATCGGGTTCTCCTCG 420
                      ****************************************     * *   ** ** ** 

consensus_8742#0      AACTACT-CTCTTCGTTTCATATTATAAATCGTTTAAACTTTTTTTTAAGTTAAACTTGT 432
consensus_8742#1      GACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGGTTTACAGGGGTCCTCGT 480
                       **  *  **   *  *       *  * *        *    ***  **     ** **

consensus_8742#0      T-TTAAAAAATTTTGATCATCAAATGTATATAAAAATATAGTAATATTTATAGCACCAAT 491
consensus_8742#1      TACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTCGACTTCTCCAACAACACC 540
                      *   *   *     *    ***       **            *  * *  * ** **  

consensus_8742#0      TTGCACTACATTCCCAGTGTCCTG-CAACCAAATTGATAGAGAGATATTCGCGGCAGCCA 550
consensus_8742#1      GTGCAGGGTCCAGCTCGCGCTCTGATGGCCGATTTGTCAGGTCGGCAT--GGCCCAAGCG 598
                       ****        *  * *  ***    ** * ***  **   *  **  *   **  * 

consensus_8742#0      CGACCATCACCCTATGAGATAGAAAGACGGCGAGTTTCTGCACTCGCACAGGCTTGAAAA 610
consensus_8742#1      CGGCCAACGCGATCTTCTGTTCTTGGATGGCA---TTAGGCAACATCCTTGGCTACTCCT 655
                      ** *** * *  * *    *     ** ***    **  ***    *   ****      

consensus_8742#0      CAAGATTCCTAAGACAATGGCACCGGCCATCTACGCATCTTCAAGGTGAAAGAAT--CAA 668
consensus_8742#1      CCGGATCCACCAATGACTGGCACAAGTGGTTT-CCCTTTCTCATGACCAGGGCTTGCTGC 714
                      *  *** *   *   * ******  *   * * * * *  *** *   *  *  *     

consensus_8742#0      ATAGTTTGCGAGGCCCTCTCCTCTAACACTTTGATTCGTGACATCTGACTGCTACAAATC 728
consensus_8742#1      GAGGCCTGCGCGAATCTCAAAGCGGCCTTCTTGGTTGCAGTGGTGTTTTTGGGGTTGTCG 774
                         *  **** *   ***    *   *   *** **   *   * *   **         

consensus_8742#0      ACAACAGTA--GATCACCTAAGTCAGTATGTCGAGCTATGGACCATGATCCAGAGAATAG 786
consensus_8742#1      ACGGCGGTGACGATGGTGTTTGCGAGGGAGGTG-GCGCTGGACCCAGTGGCGGCGGCGAA 833
                      **  * **   ***    *  *  **   *  * **  ******  *   * * *   * 

consensus_8742#0      GCCCCTTAGGATACTAGAGAGACACCATCACTTAGAAGTTTACAGCAAATGGTGAATAGT 846
consensus_8742#1      GC-----GGAACGAGGGTGAGGCGTCGGGGCTC-----CTCGCCG----TGTTCAAGGGG 879
                      **      * *     * *** *  *    **       *  * *    ** * **  * 

consensus_8742#0      CGGCAAAATCGGCTTATCAGCTACAATTCCTATGTGCAGTAGGAACGGTGTTCAATCAAA 906
consensus_8742#1      ATGAAGAACCTCCCCGTCGGG-ATGCCGTCGGTGCTTATCGTCACCGGCCTC-------- 930
                        * * ** *  *   ** *  *      *  **   *     * ***  *         

consensus_8742#0      CAATTTGGAAATGTTAGGCGCCCCTAAAGTGCAAATTTTTCATATAGTTGGTCATCCAAA 966
consensus_8742#1      --ACCTGGCTCTCGTGGTTCCCCTTCATCCTCTTCGACACCGACTGGATGGGC-CGCGAG 987
                        *  ***   *  * *   *** * *    *        *   * * *** *   * * 

consensus_8742#0      ATAGGGTGTGGACGGCTGATAGGCTATAGAAGAGAGGTTAGCAAAACCAAAGAGTCTGCC 1026
consensus_8742#1      ATCTACCATGGCCGCCCGGACGGCTCCCCCGCCGAGGTCACCGCCTTCCAAGAGGGTGTC 1047
                      **      *** ** * *   ****        ***** * *     * *****  ** *

consensus_8742#0      CCTTCTATAGAGTATCACAGGAAACGACAATCCATCTTATCGCAAAATGCAGGCTCTCTA 1086
consensus_8742#1      CGCC----AAGGCGCCTTCGGCCTCCTCC-TTAACTCGATCGTGCTGGGCATCAGCTCGT 1102
                      *       *  *   *   **   *  *  *  *    ****      ***    ***  

consensus_8742#0      TAAGGATTTAGACAGCCATACAACATTGGGCGAGCATAGACCTCAAAATACAAGATTGGG 1146
consensus_8742#1      TCCTGATCGAGCCG---ATGTGCCGTCGGCTGGGC---GCCCGCGCGGTGTGGG--TGAT 1154
                      *   ***  ** *    **    * * **  * **   * ** *    *    *  **  

consensus_8742#0      ACGCTTGCGCTTCGATGGAAGAATGGTGGAAGAGGGTTCTTCACACACCGCACATCCCCA 1206
consensus_8742#1      GAGCAGCGCCGTCGTGTGCGTCGCCATGGCGGCCGTCTCCGTGCTCAGCGCGTGGTCGCT 1214
                        **     * ***   *        ***  *  *  **    * ** ***     * * 

consensus_8742#0      AAGGACCTTTAAAATCCCTGATTATCCTGGTGGGTTGGGAGCTCTGGTGTGAGAGAAACA 1266
consensus_8742#1      CGGCGACTTCGGCGGCTCGGTGCAGGACG-CAGCGCGGGCGCCGGCGGAGGAGGGCGGCG 1273
                        *   ***      * * *   *    *   *   *** **    *   *** *   * 

consensus_8742#0      CTAGGATATT----CCGCCACGTGGCTACCACCCTGACAACCATCATCGCTAAAATCAAA 1322
consensus_8742#1      TCAGGGCGTCGGCGCTGGCGCTCTTCGTCTTCCTCGGCCTCC-CCTTCGCCGTCCTCTGC 1332
                        ***   *     * * * *    *  *  **  * *  **  * ****     **   

consensus_8742#0      GAAGAGGGGTTGGCC----TGGATCAAAGTGGGATCAAAGTGGGAGCCGCAAAAGCTCGT 1378
consensus_8742#1      AGCGTCCCGTTCGCCGTCACGGCGCAGCTCGCGGCGAGCCGCGGCGGCGGGCAGGGCCTC 1392
                         *    *** ***     **  **    * *   *     ** * **   * *  *  

consensus_8742#0      TGAGTTAACTTCGTTGGAAGAACCCTATAGTTTCTCCTTCTGTGGGCTCTTTTTTTTTAT 1438
consensus_8742#1      TGCACCGGCGTCCTC--AACATCTCCATCGTCG-TGCCGCAGATGGCCATCGCCCTCGGC 1449
                      **      * ** *   ** * * * ** **   * *  * *  ***  *     *    

consensus_8742#0      GGCAGGCCCTGTAAATAACTCTTTTTTTGGTTGTTTGTTTTTTCTCCTACTCTATCAATA 1498
consensus_8742#1      GCCGGGCCCTGGGACGAGCTGTTCGGGGAGGGGAACATCCCGGCGTTCGCCATGGCG-TC 1508
                      * * *******  *  * ** **      *  *    *     *     *  *  *  * 

consensus_8742#0      TATGCAAGGTAAAGCTTTCGTCTTTTTTTTTAAAAAAAAAGTGCACTATATCTAA---CA 1555
consensus_8742#1      CGTGTTCGCCGCCGCGGCCGCCGCCGCCGGCGTCGTCTTGCTGCCCAAGGTCTCCGTCCG 1568
                        **   *     **   ** *                   *** * *  ***     * 

consensus_8742#0      ATTCATAAATTTAGTTAA-AACTAAAGTGACTTAAAAGTTAAAAAAACTAATAATATGAA 1614
consensus_8742#1      CTCCGTCAGCATGGCCGGCGGCCACTGATCACTACTAGTCTATCACCCTTTTTTTTTCCG 1628
                       * * * *   * *       * *  *     **  ***  *  *  **  *  * *   

consensus_8742#0      ACGGAGGTAAGTAGTTAGTTATTTGATTAACTAATTACATGACTGACAGGTGATCGTCAT 1674
consensus_8742#1      -TGGTTTTAAATCTCCCGCTATAGCTGCTGCTATCTCCAGTTAGAGCGGGTACTA--TAG 1685
                        **   *** *     * ***        ***  * **       * ***  *    * 

consensus_8742#0      CGGGTTCTCCTCGGACATCGGCTACGCTCTCGGCGACACGACTGAGGACTGCAAGTAATT 1734
consensus_8742#1      CAGGCTATA--------------------------------------------------- 1694
                      * ** * *                                                    

consensus_8742#0      AAGCTGCTCGATCACTGACAGTGACAGAGCTTGATGAATTCGCTGATTAAATCATTGGTC 1794
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      GATTAGTAAGCAAAATTTCAGGATTCGGACTCGCTAATCGAGCGACTTAATCCATCCAGG 1854
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      GTTTACAGGGGTCCTCGTTACCATGCAGCGGCGGCATTCATCCTCGGATTCTGGCTGCTC 1914
consensus_8742#1      ------------------------------------------------------------
                                                                                  

consensus_8742#0      GACTTCTCCAACAACACCGTGCAGGT 1940
consensus_8742#1      --------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)