These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1044 fasta sequence [ACTGCCATCGAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG-CGTTTTGATC-AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG-AACATTGAGATTGGCAGTGTAAGGGAGG-TTAATGTTAAGTCTGGCCTGCCTGCC-ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA-CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG-CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA-CCAAACCGAGCCCCTCGACCGGTGATTGTTG-CCAAGATTCCA-AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATATTGTGCCTCCTCTTTGAGCCTCTGTTGCTGTTCTTTACCACCCTAGTATGTCACAAGGGCCTAAAAAAAATATTGT] [+] EMBL AK064805 [ACTGCCATCGAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGACTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAA ] [+] EMBL AK059303 [ GAGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATATTGTGCCTCCTCTTTGAGCCTCTGTTGCTGTTCTTTACCACCCTAGTATGTCACAAGGGCCTAAAAAAAATATTGT] [+] EMBL AK104581 [ AGAGGTCGTCGTCGTCGTCGTCGATCACCTCGTCGTCGACGCACCACCAAAGCAAAGGCAAACCAAAACTCCTCTCCTCCTCCTCGTCTTCGCCGCCTGCGCGCGTCGCCGTCGCGTCCAGCCGGGGCGGAGGGAGGGGGGGTTCTTGAGGATGGTGGAGGTGGGAGGAGGAGCGGCGGAGGCGGCGGCGGGGAGGAGGTGGCGGCTGGCGGACGAGAGGTGCGACCTGCGCGCGGCGGAGACGGAGTACGTGAGGCGGTTCCACCGCCACGAGCCCCGCGACCACCAGTGCTCCTCCGCCGTCGCCAAGCACATCAAGGCCCCCGTCCACCTGGTTTGGTCTCTGGTGAGG CGTTTTGATC AGCCACAGCTTTTCAAGCCATTTGTGAGCCGGTGTGAGATGAAAGGG AACATTGAGATTGGCAGTGTAAGGGAGG TTAATGTTAAGTCTGGCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CCAAGATTCCA AGAGCTATTTTGTGTTGCAAATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATA ] [+] EMBL BQ907597 [ TCT GTGAGGCCTTTTTGATCAACCCACAGCTTTTCAA CCATTTGTGA CCGGTGTGAGATGAAAGGG AACATTGAGATT GCAGTGTAAGGGAGG TTAATGTTAAGTCT GCCTGCCTGCC ACAAGAAGCACTGAGAGGCTGGAGCTGTTAGATGAC ATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCACCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACA CCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTG CAGAGGTTTCTGAACGCCTGGTTGTCAAGGA CCAAACCGAGCCCCTCGACCGGTGATTGTTG CC AGATTCC AGAGCTATTTTGTGTTGC AATGCTTAATTAGATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGACTTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTC AACC AAAGAGAAGAAAANCAAATATTGT CCTCCTCTTTGACCCaaaa ] [-] EMBL BU667220 [ aAAAGGGAAACATGAAGATTGGCA T TAAGGGAGGTTTAATGTTAAGTCT GCCTGCCTGCCAACAAGAAGCCCTGAGAGGCTGGAGCTGTTAGATGACAATGAGCACATACTCAGTGTCAGGTTCGTGGGAGGTGATCATAGGCTCAAGAATTACTCCTCCATCCTGACCGTCCCCCCGGAGGTGATCGACGGCCGGCCCGGGACGCTGGTGATCGAGTCGTTCGTCGTCGACGTCCCGGAGGGGAACACCCAAGGATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTGCCAGAGGTTTCTGAACGCCTGGTTGTCAAGGACCCAACCCGAGCCCCTCGACCGGTGATTGTTGCCCCAGATTCCACAGAGCTA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||