cluster # 8746

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Oryza sativa
cluster # 8746 cluster # 8746 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8746#0 length = 880 sequences # 3

consensus_8746#1 length = 202 sequences # 1
consensus_8746#2 length = 123 sequences # 1

consensusID : consensus_8746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 880
fasta sequence

                              [CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCATGGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGGAGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTCTTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGACGACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGCAAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGGTGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGCGCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGCGCCGGGCAGTGCGGGCGCGACGCGCAG-AAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA]

[+] EMBL AK065210             [CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCATGGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGGAGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTCTTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGACGACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGCAAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGGTGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGCGCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGCGCCGGGCAGTGCGGGCGCGACGCGCAG AAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCAT                                                                                                                                                            ]
[+] EMBL AU161865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGCCGGGCAGTGCGGGCGCGACGC CAGNAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA]
[+] EMBL AU102058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGCCGGGCAGTGCGGG GCGACGCGCAG AAGAAGGAGGGCGGCGGGTGGAA CTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCAC CGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA]




>consensus_8746#0
CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCAT
GGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACT
GCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGG
AGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTC
TTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGAC
GACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGC
AAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGG
TGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGC
GCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGC
GCCGGGCAGTGCGGGCGCGACGCGCAGAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAA
TCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCG
CGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAG
GCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTT
TTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAG
TACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA

consensusID : consensus_8746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [AGAGGCGAGACAAGGGGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA]

[-] EMBL CA761793             [AGAGGCGAGACAAGGGGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA]




>consensus_8746#1
AGAGGCGAGACAAGGGGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATT
TGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGA
GCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACATGTATTCAAATTAAGA
GCTATTAAAAAAAAAAAAAAAA

consensusID : consensus_8746#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 123
fasta sequence

                              [TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB096400             [TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8746#2
TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAAT
GAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8746#0      CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCAT 60
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACT 120
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGG 180
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      AGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTC 240
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGAC 300
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGC 360
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      AAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGG 420
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGC 480
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGC 540
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GCCGGGCAGTGCGGGCGCGACGCGCAGAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAA 600
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      TCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCG 660
consensus_8746#1      ------------------------------------------------------------
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      CGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAG 720
consensus_8746#1      -------------------------------AGAGGCGAGACAAGGGGCTTGCCGAGGAG 29
consensus_8746#2      ------------------------------------------------------------
                                                                                  

consensus_8746#0      GCATTTGATCTGTCCAATGATTTTTTTT-ATTTGATGTAATTATCAATTGGTGATGTCTT 779
consensus_8746#1      GCATTTGATCTGTCCAATGATTTTTTTT-ATTTGATGTAATTATCAATTGGTGATGTCTT 88
consensus_8746#2      --------TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTT 52
                              ******************** *******************************

consensus_8746#0      TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTA 839
consensus_8746#1      TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTA 148
consensus_8746#2      TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAA 112
                      ******************************************* *    ***       *

consensus_8746#0      GTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA------------- 880
consensus_8746#1      GTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA 202
consensus_8746#2      AAAA-------AAAAAAA------------------------------------ 123
                        *        *** *