Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 875 cluster # 875       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_875#0 length = 3615 sequences # 1  
 consensus_875#1 length = 542 sequences # 1  
consensusID : consensus_875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3615
fasta sequence 
                              [CACTCTCCTCCTCCCCGCTTCGGATTCCACCGTCGCGGAGCTCGGCGCGGGCGGAGATGGAGGGCGACGCCGCCGGAGCCGGTGGCGGCGACCGGTCGAGCATCGTGATCGGCCTCATCGAGAACCGAGCCAAGGAGGTTGGTGTTGCTGCTTTTGATTTGAGATCAGCCTCACTGCATCTTTCTCAGTATATTGAGACCAGTTGCTCATATCACAATACGAAGACACTTCTGCATTTCTATGATCCTATGGTTGCAATAGTGCCCCCAAACAAAACAGCAGCAGACGGTATGGTTGGAGTTTCAGAGCTGGTTGGTAAACATTTGCCAACAAATAAAAAGATAACAATGGCACGTGGCTGCTTTGATGACACAAAGGGTGCTGTTATGGTAAAAAATCTTTCAGCTAGAGACCCATCTGCACTCGGTTTAGATACTTATTGCAAGCAATACTATCTTTGTCTTGCTGCTGCCTCTGCAACAATTAAGTGGATTGAATCAGAAAGAGGTGTAATTATCACTAATCACTCATTATCAGTTACATTCAATGGGTCATTTGACCACATGAACATTGACTCAACTAGTGTACAAACATTGGAAATTATTGACCCTTTTCATACTGAACTGTGGGGAACTAGCAACAAAAAGAAAAGTCTCTTTCAGATGTTGAAGACTACAAAGACTACAGGAGGGACTAGACTACTGAGAGCCAACTTGTTGCAACCGTTAAAAGACATTCAAACAATCAATACTCGTCTGGATTGCTTGGTAAGGAGATTAATCTTTTTTGTTATTCTCAATTCTTAAATTGGAATGTCTGTTTGATCAAATTGGTCATACGGTAATCCTGACATTTGAAACTTCCAAAGTTGCACATATTAAGTTCTGGATCTTCTAGTAGGCTAGGTTCTGGATCTTCTGTGGGAATGAACTAACTTCATGGAGTATGAACCCTGCTTTATGCATGTGGAAATCTTAGTGCATATAGTCTTAAATCGTTACTCGAAGGGTTTACCACAATCATGTTTGTACCATTTATTGTTCATTTCCTGTTGGAGCACTTTGCAATATAATGGAGAATTTTACTGCAACCATGATTGTACACCACAGGCCATATGTGAAAGTATTTCCATGAGAAGGGGAAGCAATAGTTCTTGTAATATTGATATGCAACGCTCCTTTGCAAGAATGAAAGTCAACTGGAATCTGGGATATAACAAGTATTCAGTTACTAATATTATCATCGAAAATGATCAGTAATATATCCAATAAATGCATGTTTATTAATTTTATATCTTAAATTTTAGGATGAGCTAATGAGTAATGAGGAATTATTCTTTGGCTTGACACAAGGTCTTCGTAAGTTTCCAAAAGAATCAGATAAAGTTCTTTGCCACTTCTGCTTCAAACCCAAAAAGGATACTGATGAAGTGCTAAAGCCTGCCAATGGTAGAAAGAGCCAAGGGCTGATTTCTGACATTATTGTTCTAAAAACAGCTCTGGATGCCATACCATTCCTCTCCAAGGTAGTGTTATAGATGTGTTTGTCCTAGTATTCAATTTAGCAATTTATTCATTCTGATTTTTCATTTTGTTTTGTTTTTGAAGATGCATGTTATTTTGTTCATTTAAGGGTAAATGTCCTTTATTCTAGAAACATACCCATCTACCTTTTCACGCATGTGATGTGTAGCTCATCACAGGTTCTAAGGGGTGCAAAAAGTTTCCTTCTTCGCAACATTTATCAGACTATATGTGAAAACCCAAAGTATGCAAGCATGAGAAAGAGGTACTGTTTTCTGACCTTTTTCCTCCCATTTCAAAGGAGAAGTTGAATGAAGACTGAAAACAGCATGCTAACTTCAGGCTTAGTCTTCCCATCCTGCTTTTGTTTGTACATTTGTTTTTAGTTTTTAGTAATATTGCGAGTATATTAGCATTATGTGACTGTAAATATGTTCGTCCACATTTATTAAATAACAAGTATATCCATCTACATTCTAAAAGTAACCATTCACCTTTGATTTGGTTGCATGTTTTCTTTTATGATCCTAGAATTGGGGATGTCATTGATGAAGATGTTGTTCATTCAAGGGCTCCTTTTGTAACCTGCACTCAACAATGTTTTGCTATTAAGGCTGGAATTGATGGACTGCTTGATGTTGCTCGTAGATCTTTCTGTGATACCAGCGAAGCCATACATAACCTTGCCAACAAGTACAGGGAGGATTTTAAGCTTCCAAATTTGAAGATACCATATAACAACAGACTAGGATTTTATTTTATTGTACCCCAGAAGGACATTACTGAAAGGCTCCCTAATAAATTTATCCAGGTAGTTAGACATGGGAAGAATGTCCACTGCTCAAGCTTGGAGCTTGCTTCGCTAAATGCCAGGAATAAGTCTGCTGCTGCTGAGTGCTTCTTGCGCACGGAACTTTGTTTGGAAGGGCTTATTAATGAGATCAGAGAAGACATTGGTATATTAACGTTGCTTGCCGAAGTATTATGCCTGTTGGACATGCTTGTAAATTCTTTTGCGTTTACAATATCTACTAAGCCCGTTGATCGTTACACGAGACCTGAATTCACTGATGATGGTCCGATGGCAATTAATGCTGGAAGGCATCCTATTCTTGAGAGCTTGCATAATGATTTTGTTCCTAACAATCTCTTTCTGTCTGAAGCATCTAATATGGTTCTTGTCATGGGGCCAAACATGAGTGGGAAGAGCACATATCTTCAACAGATTTGTCTAATAGTCATTCTTGCACAAATTGGCTGTTATGTTCCAGCTCAATTTGCATCACTAAGAGTGGTTGATCGCGTATTCACACGGATTGGCACTGGGGACAATGTTGAAAATAACTCAAGCACATTCATGACAGAAATGAAAGAGACAGCTTTCATTATGCAGAATGTTTCTTCGAAGTACTATGGGTCTACCATGCTGCAATAGATTGGATTGCTGTTTCTCTTGTTTCCTTGTAATGACCATGTGCACATTTGCACACATTACAGGAGCCTGATTGTTGTGGATGAGCTTGGAAGAGCTACGTCTTCCTCTGATGGGTTGGCAATTGCATGGAGCTGCTGTGAATATCTATTATCTACCAAAGCCTACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAACGTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGGTTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGTCTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAAATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTCACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCGTTGCAGAATCTCAAGGACGGCTATGCTGCAGGCCGCTTGACATGAGAAGAAAAATATATGTAAAAAGGAGTTTTTGTTTCTCTCTCCTACAGCTGGCAGCATGTATGGATTATGGTCGTATGGATGTAGCCATGT]

[+] EMBL AK069343             [CACTCTCCTCCTCCCCGCTTCGGATTCCACCGTCGCGGAGCTCGGCGCGGGCGGAGATGGAGGGCGACGCCGCCGGAGCCGGTGGCGGCGACCGGTCGAGCATCGTGATCGGCCTCATCGAGAACCGAGCCAAGGAGGTTGGTGTTGCTGCTTTTGATTTGAGATCAGCCTCACTGCATCTTTCTCAGTATATTGAGACCAGTTGCTCATATCACAATACGAAGACACTTCTGCATTTCTATGATCCTATGGTTGCAATAGTGCCCCCAAACAAAACAGCAGCAGACGGTATGGTTGGAGTTTCAGAGCTGGTTGGTAAACATTTGCCAACAAATAAAAAGATAACAATGGCACGTGGCTGCTTTGATGACACAAAGGGTGCTGTTATGGTAAAAAATCTTTCAGCTAGAGACCCATCTGCACTCGGTTTAGATACTTATTGCAAGCAATACTATCTTTGTCTTGCTGCTGCCTCTGCAACAATTAAGTGGATTGAATCAGAAAGAGGTGTAATTATCACTAATCACTCATTATCAGTTACATTCAATGGGTCATTTGACCACATGAACATTGACTCAACTAGTGTACAAACATTGGAAATTATTGACCCTTTTCATACTGAACTGTGGGGAACTAGCAACAAAAAGAAAAGTCTCTTTCAGATGTTGAAGACTACAAAGACTACAGGAGGGACTAGACTACTGAGAGCCAACTTGTTGCAACCGTTAAAAGACATTCAAACAATCAATACTCGTCTGGATTGCTTGGTAAGGAGATTAATCTTTTTTGTTATTCTCAATTCTTAAATTGGAATGTCTGTTTGATCAAATTGGTCATACGGTAATCCTGACATTTGAAACTTCCAAAGTTGCACATATTAAGTTCTGGATCTTCTAGTAGGCTAGGTTCTGGATCTTCTGTGGGAATGAACTAACTTCATGGAGTATGAACCCTGCTTTATGCATGTGGAAATCTTAGTGCATATAGTCTTAAATCGTTACTCGAAGGGTTTACCACAATCATGTTTGTACCATTTATTGTTCATTTCCTGTTGGAGCACTTTGCAATATAATGGAGAATTTTACTGCAACCATGATTGTACACCACAGGCCATATGTGAAAGTATTTCCATGAGAAGGGGAAGCAATAGTTCTTGTAATATTGATATGCAACGCTCCTTTGCAAGAATGAAAGTCAACTGGAATCTGGGATATAACAAGTATTCAGTTACTAATATTATCATCGAAAATGATCAGTAATATATCCAATAAATGCATGTTTATTAATTTTATATCTTAAATTTTAGGATGAGCTAATGAGTAATGAGGAATTATTCTTTGGCTTGACACAAGGTCTTCGTAAGTTTCCAAAAGAATCAGATAAAGTTCTTTGCCACTTCTGCTTCAAACCCAAAAAGGATACTGATGAAGTGCTAAAGCCTGCCAATGGTAGAAAGAGCCAAGGGCTGATTTCTGACATTATTGTTCTAAAAACAGCTCTGGATGCCATACCATTCCTCTCCAAGGTAGTGTTATAGATGTGTTTGTCCTAGTATTCAATTTAGCAATTTATTCATTCTGATTTTTCATTTTGTTTTGTTTTTGAAGATGCATGTTATTTTGTTCATTTAAGGGTAAATGTCCTTTATTCTAGAAACATACCCATCTACCTTTTCACGCATGTGATGTGTAGCTCATCACAGGTTCTAAGGGGTGCAAAAAGTTTCCTTCTTCGCAACATTTATCAGACTATATGTGAAAACCCAAAGTATGCAAGCATGAGAAAGAGGTACTGTTTTCTGACCTTTTTCCTCCCATTTCAAAGGAGAAGTTGAATGAAGACTGAAAACAGCATGCTAACTTCAGGCTTAGTCTTCCCATCCTGCTTTTGTTTGTACATTTGTTTTTAGTTTTTAGTAATATTGCGAGTATATTAGCATTATGTGACTGTAAATATGTTCGTCCACATTTATTAAATAACAAGTATATCCATCTACATTCTAAAAGTAACCATTCACCTTTGATTTGGTTGCATGTTTTCTTTTATGATCCTAGAATTGGGGATGTCATTGATGAAGATGTTGTTCATTCAAGGGCTCCTTTTGTAACCTGCACTCAACAATGTTTTGCTATTAAGGCTGGAATTGATGGACTGCTTGATGTTGCTCGTAGATCTTTCTGTGATACCAGCGAAGCCATACATAACCTTGCCAACAAGTACAGGGAGGATTTTAAGCTTCCAAATTTGAAGATACCATATAACAACAGACTAGGATTTTATTTTATTGTACCCCAGAAGGACATTACTGAAAGGCTCCCTAATAAATTTATCCAGGTAGTTAGACATGGGAAGAATGTCCACTGCTCAAGCTTGGAGCTTGCTTCGCTAAATGCCAGGAATAAGTCTGCTGCTGCTGAGTGCTTCTTGCGCACGGAACTTTGTTTGGAAGGGCTTATTAATGAGATCAGAGAAGACATTGGTATATTAACGTTGCTTGCCGAAGTATTATGCCTGTTGGACATGCTTGTAAATTCTTTTGCGTTTACAATATCTACTAAGCCCGTTGATCGTTACACGAGACCTGAATTCACTGATGATGGTCCGATGGCAATTAATGCTGGAAGGCATCCTATTCTTGAGAGCTTGCATAATGATTTTGTTCCTAACAATCTCTTTCTGTCTGAAGCATCTAATATGGTTCTTGTCATGGGGCCAAACATGAGTGGGAAGAGCACATATCTTCAACAGATTTGTCTAATAGTCATTCTTGCACAAATTGGCTGTTATGTTCCAGCTCAATTTGCATCACTAAGAGTGGTTGATCGCGTATTCACACGGATTGGCACTGGGGACAATGTTGAAAATAACTCAAGCACATTCATGACAGAAATGAAAGAGACAGCTTTCATTATGCAGAATGTTTCTTCGAAGTACTATGGGTCTACCATGCTGCAATAGATTGGATTGCTGTTTCTCTTGTTTCCTTGTAATGACCATGTGCACATTTGCACACATTACAGGAGCCTGATTGTTGTGGATGAGCTTGGAAGAGCTACGTCTTCCTCTGATGGGTTGGCAATTGCATGGAGCTGCTGTGAATATCTATTATCTACCAAAGCCTACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAACGTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGGTTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGTCTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAAATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTCACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCGTTGCAGAATCTCAAGGACGGCTATGCTGCAGGCCGCTTGACATGAGAAGAAAAATATATGTAAAAAGGAGTTTTTGTTTCTCTCTCCTACAGCTGGCAGCATGTATGGATTATGGTCGTATGGATGTAGCCATGT]




>consensus_875#0
CACTCTCCTCCTCCCCGCTTCGGATTCCACCGTCGCGGAGCTCGGCGCGGGCGGAGATGG
AGGGCGACGCCGCCGGAGCCGGTGGCGGCGACCGGTCGAGCATCGTGATCGGCCTCATCG
AGAACCGAGCCAAGGAGGTTGGTGTTGCTGCTTTTGATTTGAGATCAGCCTCACTGCATC
TTTCTCAGTATATTGAGACCAGTTGCTCATATCACAATACGAAGACACTTCTGCATTTCT
ATGATCCTATGGTTGCAATAGTGCCCCCAAACAAAACAGCAGCAGACGGTATGGTTGGAG
TTTCAGAGCTGGTTGGTAAACATTTGCCAACAAATAAAAAGATAACAATGGCACGTGGCT
GCTTTGATGACACAAAGGGTGCTGTTATGGTAAAAAATCTTTCAGCTAGAGACCCATCTG
CACTCGGTTTAGATACTTATTGCAAGCAATACTATCTTTGTCTTGCTGCTGCCTCTGCAA
CAATTAAGTGGATTGAATCAGAAAGAGGTGTAATTATCACTAATCACTCATTATCAGTTA
CATTCAATGGGTCATTTGACCACATGAACATTGACTCAACTAGTGTACAAACATTGGAAA
TTATTGACCCTTTTCATACTGAACTGTGGGGAACTAGCAACAAAAAGAAAAGTCTCTTTC
AGATGTTGAAGACTACAAAGACTACAGGAGGGACTAGACTACTGAGAGCCAACTTGTTGC
AACCGTTAAAAGACATTCAAACAATCAATACTCGTCTGGATTGCTTGGTAAGGAGATTAA
TCTTTTTTGTTATTCTCAATTCTTAAATTGGAATGTCTGTTTGATCAAATTGGTCATACG
GTAATCCTGACATTTGAAACTTCCAAAGTTGCACATATTAAGTTCTGGATCTTCTAGTAG
GCTAGGTTCTGGATCTTCTGTGGGAATGAACTAACTTCATGGAGTATGAACCCTGCTTTA
TGCATGTGGAAATCTTAGTGCATATAGTCTTAAATCGTTACTCGAAGGGTTTACCACAAT
CATGTTTGTACCATTTATTGTTCATTTCCTGTTGGAGCACTTTGCAATATAATGGAGAAT
TTTACTGCAACCATGATTGTACACCACAGGCCATATGTGAAAGTATTTCCATGAGAAGGG
GAAGCAATAGTTCTTGTAATATTGATATGCAACGCTCCTTTGCAAGAATGAAAGTCAACT
GGAATCTGGGATATAACAAGTATTCAGTTACTAATATTATCATCGAAAATGATCAGTAAT
ATATCCAATAAATGCATGTTTATTAATTTTATATCTTAAATTTTAGGATGAGCTAATGAG
TAATGAGGAATTATTCTTTGGCTTGACACAAGGTCTTCGTAAGTTTCCAAAAGAATCAGA
TAAAGTTCTTTGCCACTTCTGCTTCAAACCCAAAAAGGATACTGATGAAGTGCTAAAGCC
TGCCAATGGTAGAAAGAGCCAAGGGCTGATTTCTGACATTATTGTTCTAAAAACAGCTCT
GGATGCCATACCATTCCTCTCCAAGGTAGTGTTATAGATGTGTTTGTCCTAGTATTCAAT
TTAGCAATTTATTCATTCTGATTTTTCATTTTGTTTTGTTTTTGAAGATGCATGTTATTT
TGTTCATTTAAGGGTAAATGTCCTTTATTCTAGAAACATACCCATCTACCTTTTCACGCA
TGTGATGTGTAGCTCATCACAGGTTCTAAGGGGTGCAAAAAGTTTCCTTCTTCGCAACAT
TTATCAGACTATATGTGAAAACCCAAAGTATGCAAGCATGAGAAAGAGGTACTGTTTTCT
GACCTTTTTCCTCCCATTTCAAAGGAGAAGTTGAATGAAGACTGAAAACAGCATGCTAAC
TTCAGGCTTAGTCTTCCCATCCTGCTTTTGTTTGTACATTTGTTTTTAGTTTTTAGTAAT
ATTGCGAGTATATTAGCATTATGTGACTGTAAATATGTTCGTCCACATTTATTAAATAAC
AAGTATATCCATCTACATTCTAAAAGTAACCATTCACCTTTGATTTGGTTGCATGTTTTC
TTTTATGATCCTAGAATTGGGGATGTCATTGATGAAGATGTTGTTCATTCAAGGGCTCCT
TTTGTAACCTGCACTCAACAATGTTTTGCTATTAAGGCTGGAATTGATGGACTGCTTGAT
GTTGCTCGTAGATCTTTCTGTGATACCAGCGAAGCCATACATAACCTTGCCAACAAGTAC
AGGGAGGATTTTAAGCTTCCAAATTTGAAGATACCATATAACAACAGACTAGGATTTTAT
TTTATTGTACCCCAGAAGGACATTACTGAAAGGCTCCCTAATAAATTTATCCAGGTAGTT
AGACATGGGAAGAATGTCCACTGCTCAAGCTTGGAGCTTGCTTCGCTAAATGCCAGGAAT
AAGTCTGCTGCTGCTGAGTGCTTCTTGCGCACGGAACTTTGTTTGGAAGGGCTTATTAAT
GAGATCAGAGAAGACATTGGTATATTAACGTTGCTTGCCGAAGTATTATGCCTGTTGGAC
ATGCTTGTAAATTCTTTTGCGTTTACAATATCTACTAAGCCCGTTGATCGTTACACGAGA
CCTGAATTCACTGATGATGGTCCGATGGCAATTAATGCTGGAAGGCATCCTATTCTTGAG
AGCTTGCATAATGATTTTGTTCCTAACAATCTCTTTCTGTCTGAAGCATCTAATATGGTT
CTTGTCATGGGGCCAAACATGAGTGGGAAGAGCACATATCTTCAACAGATTTGTCTAATA
GTCATTCTTGCACAAATTGGCTGTTATGTTCCAGCTCAATTTGCATCACTAAGAGTGGTT
GATCGCGTATTCACACGGATTGGCACTGGGGACAATGTTGAAAATAACTCAAGCACATTC
ATGACAGAAATGAAAGAGACAGCTTTCATTATGCAGAATGTTTCTTCGAAGTACTATGGG
TCTACCATGCTGCAATAGATTGGATTGCTGTTTCTCTTGTTTCCTTGTAATGACCATGTG
CACATTTGCACACATTACAGGAGCCTGATTGTTGTGGATGAGCTTGGAAGAGCTACGTCT
TCCTCTGATGGGTTGGCAATTGCATGGAGCTGCTGTGAATATCTATTATCTACCAAAGCC
TACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAAC
GTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGG
TTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGT
CTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAA
ATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTC
ACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCG
TTGCAGAATCTCAAGGACGGCTATGCTGCAGGCCGCTTGACATGAGAAGAAAAATATATG
TAAAAAGGAGTTTTTGTTTCTCTCTCCTACAGCTGGCAGCATGTATGGATTATGGTCGTA
TGGATGTAGCCATGT

consensusID : consensus_875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence 
                              [AGCATAGTGCCTGGGGGTGCTTGACATGCTGAATGCAGCTGGTCATGTTTGGTTAATCTTGCCAACCACAATATGGTCTATTAGTTACAGATATAACCTTTTAAGACAAGATATCATCCTTGTTGAGCAAATCCTACTATCTTAGAAGCATCACTGTCGGGTCTTTTCACCCAATGCAGCTACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAACGTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGGTTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGTCTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAAATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTCACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCGTT]

[+] EMBL CF322526             [AGCATAGTGCCTGGGGGTGCTTGACATGCTGAATGCAGCTGGTCATGTTTGGTTAATCTTGCCAACCACAATATGGTCTATTAGTTACAGATATAACCTTTTAAGACAAGATATCATCCTTGTTGAGCAAATCCTACTATCTTAGAAGCATCACTGTCGGGTCTTTTCACCCAATGCAGCTACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAACGTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGGTTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGTCTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAAATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTCACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCGTT]




>consensus_875#1
AGCATAGTGCCTGGGGGTGCTTGACATGCTGAATGCAGCTGGTCATGTTTGGTTAATCTT
GCCAACCACAATATGGTCTATTAGTTACAGATATAACCTTTTAAGACAAGATATCATCCT
TGTTGAGCAAATCCTACTATCTTAGAAGCATCACTGTCGGGTCTTTTCACCCAATGCAGC
TACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAAC
GTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGG
TTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGT
CTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAA
ATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTC
ACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCG
TT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_875#0      CACTCTCCTCCTCCCCGCTTCGGATTCCACCGTCGCGGAGCTCGGCGCGGGCGGAGATGG 60
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGGGCGACGCCGCCGGAGCCGGTGGCGGCGACCGGTCGAGCATCGTGATCGGCCTCATCG 120
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGAACCGAGCCAAGGAGGTTGGTGTTGCTGCTTTTGATTTGAGATCAGCCTCACTGCATC 180
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTCTCAGTATATTGAGACCAGTTGCTCATATCACAATACGAAGACACTTCTGCATTTCT 240
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      ATGATCCTATGGTTGCAATAGTGCCCCCAAACAAAACAGCAGCAGACGGTATGGTTGGAG 300
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTCAGAGCTGGTTGGTAAACATTTGCCAACAAATAAAAAGATAACAATGGCACGTGGCT 360
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GCTTTGATGACACAAAGGGTGCTGTTATGGTAAAAAATCTTTCAGCTAGAGACCCATCTG 420
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CACTCGGTTTAGATACTTATTGCAAGCAATACTATCTTTGTCTTGCTGCTGCCTCTGCAA 480
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CAATTAAGTGGATTGAATCAGAAAGAGGTGTAATTATCACTAATCACTCATTATCAGTTA 540
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CATTCAATGGGTCATTTGACCACATGAACATTGACTCAACTAGTGTACAAACATTGGAAA 600
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTATTGACCCTTTTCATACTGAACTGTGGGGAACTAGCAACAAAAAGAAAAGTCTCTTTC 660
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGATGTTGAAGACTACAAAGACTACAGGAGGGACTAGACTACTGAGAGCCAACTTGTTGC 720
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AACCGTTAAAAGACATTCAAACAATCAATACTCGTCTGGATTGCTTGGTAAGGAGATTAA 780
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TCTTTTTTGTTATTCTCAATTCTTAAATTGGAATGTCTGTTTGATCAAATTGGTCATACG 840
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GTAATCCTGACATTTGAAACTTCCAAAGTTGCACATATTAAGTTCTGGATCTTCTAGTAG 900
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GCTAGGTTCTGGATCTTCTGTGGGAATGAACTAACTTCATGGAGTATGAACCCTGCTTTA 960
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGCATGTGGAAATCTTAGTGCATATAGTCTTAAATCGTTACTCGAAGGGTTTACCACAAT 1020
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CATGTTTGTACCATTTATTGTTCATTTCCTGTTGGAGCACTTTGCAATATAATGGAGAAT 1080
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTACTGCAACCATGATTGTACACCACAGGCCATATGTGAAAGTATTTCCATGAGAAGGG 1140
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GAAGCAATAGTTCTTGTAATATTGATATGCAACGCTCCTTTGCAAGAATGAAAGTCAACT 1200
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GGAATCTGGGATATAACAAGTATTCAGTTACTAATATTATCATCGAAAATGATCAGTAAT 1260
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      ATATCCAATAAATGCATGTTTATTAATTTTATATCTTAAATTTTAGGATGAGCTAATGAG 1320
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TAATGAGGAATTATTCTTTGGCTTGACACAAGGTCTTCGTAAGTTTCCAAAAGAATCAGA 1380
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TAAAGTTCTTTGCCACTTCTGCTTCAAACCCAAAAAGGATACTGATGAAGTGCTAAAGCC 1440
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGCCAATGGTAGAAAGAGCCAAGGGCTGATTTCTGACATTATTGTTCTAAAAACAGCTCT 1500
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GGATGCCATACCATTCCTCTCCAAGGTAGTGTTATAGATGTGTTTGTCCTAGTATTCAAT 1560
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTAGCAATTTATTCATTCTGATTTTTCATTTTGTTTTGTTTTTGAAGATGCATGTTATTT 1620
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGTTCATTTAAGGGTAAATGTCCTTTATTCTAGAAACATACCCATCTACCTTTTCACGCA 1680
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGTGATGTGTAGCTCATCACAGGTTCTAAGGGGTGCAAAAAGTTTCCTTCTTCGCAACAT 1740
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTATCAGACTATATGTGAAAACCCAAAGTATGCAAGCATGAGAAAGAGGTACTGTTTTCT 1800
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GACCTTTTTCCTCCCATTTCAAAGGAGAAGTTGAATGAAGACTGAAAACAGCATGCTAAC 1860
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTCAGGCTTAGTCTTCCCATCCTGCTTTTGTTTGTACATTTGTTTTTAGTTTTTAGTAAT 1920
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      ATTGCGAGTATATTAGCATTATGTGACTGTAAATATGTTCGTCCACATTTATTAAATAAC 1980
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AAGTATATCCATCTACATTCTAAAAGTAACCATTCACCTTTGATTTGGTTGCATGTTTTC 2040
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTTATGATCCTAGAATTGGGGATGTCATTGATGAAGATGTTGTTCATTCAAGGGCTCCT 2100
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTGTAACCTGCACTCAACAATGTTTTGCTATTAAGGCTGGAATTGATGGACTGCTTGAT 2160
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GTTGCTCGTAGATCTTTCTGTGATACCAGCGAAGCCATACATAACCTTGCCAACAAGTAC 2220
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGGGAGGATTTTAAGCTTCCAAATTTGAAGATACCATATAACAACAGACTAGGATTTTAT 2280
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TTTATTGTACCCCAGAAGGACATTACTGAAAGGCTCCCTAATAAATTTATCCAGGTAGTT 2340
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGACATGGGAAGAATGTCCACTGCTCAAGCTTGGAGCTTGCTTCGCTAAATGCCAGGAAT 2400
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AAGTCTGCTGCTGCTGAGTGCTTCTTGCGCACGGAACTTTGTTTGGAAGGGCTTATTAAT 2460
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GAGATCAGAGAAGACATTGGTATATTAACGTTGCTTGCCGAAGTATTATGCCTGTTGGAC 2520
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      ATGCTTGTAAATTCTTTTGCGTTTACAATATCTACTAAGCCCGTTGATCGTTACACGAGA 2580
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CCTGAATTCACTGATGATGGTCCGATGGCAATTAATGCTGGAAGGCATCCTATTCTTGAG 2640
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      AGCTTGCATAATGATTTTGTTCCTAACAATCTCTTTCTGTCTGAAGCATCTAATATGGTT 2700
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      CTTGTCATGGGGCCAAACATGAGTGGGAAGAGCACATATCTTCAACAGATTTGTCTAATA 2760
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GTCATTCTTGCACAAATTGGCTGTTATGTTCCAGCTCAATTTGCATCACTAAGAGTGGTT 2820
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      GATCGCGTATTCACACGGATTGGCACTGGGGACAATGTTGAAAATAACTCAAGCACATTC 2880
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      ATGACAGAAATGAAAGAGACAGCTTTCATTATGCAGAATGTTTCTTCGAAGTACTATGGG 2940
consensus_875#1      ----------------------------------AGCATAGTGCCTGGGGGTGCT----- 21
                                                       ** **  * * * *  ** **     

consensus_875#0      TCTACCATGCTGCAATAGATTGGATTGCTGTTTCTCTTGTTTCCTTGTAATGACCATGTG 3000
consensus_875#1      --TGACATGCTG-AATGCAGCTGGTCA-TGTTTGGTTAATCTTGCC--AACCACAATATG 75
                       *  ******* ***  *   * *   *****   *  * *      **  ** ** **

consensus_875#0      CACATTTGCACACATTACAGGAGCCTGATTGTTGTGGATGAGCTTGGAAGAGCTACGTCT 3060
consensus_875#1      GTCTATTA-----GTTACAGA--TATAACCTTTTAAGACAAGATATCA-----TCCTTGT 123
                       *  **       ******     * *   **   **  ** *   *     * * * *

consensus_875#0      TCCTCTGATGGGTTGGCAATTGCATGGAGCTGCTGTGAATATCTATTATCTACCAAAGCC 3120
consensus_875#1      TGAGCAAATC--CTACTATCTTAGAAGCATCACTGTCGGGTCTTTTCACCCAATGCAGC- 180
                     *   *  **    *   *  *     *     ****       * * * * *    *** 

consensus_875#0      TACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAAC 3180
consensus_875#1      TACACGGTGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAAC 240
                     ************************************************************

consensus_875#0      GTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGG 3240
consensus_875#1      GTGAAGATCCTCCATTTTGAAGTCGACCTGAGAAACGACCGCCTCGATTTCAAGTTCCGG 300
                     ************************************************************

consensus_875#0      TTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGT 3300
consensus_875#1      TTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGCAAAGGTGGCTGGT 360
                     ************************************************************

consensus_875#0      CTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAA 3360
consensus_875#1      CTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAA 420
                     ************************************************************

consensus_875#0      ATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTC 3420
consensus_875#1      ATGGTGAGGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTC 480
                     ************************************************************

consensus_875#0      ACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCG 3480
consensus_875#1      ACGCAACGGCTCATCTGCTTGAAGCAATCCAACCAAGGCGATGACTACATCCGGGAAGCG 540
                     ************************************************************

consensus_875#0      TTGCAGAATCTCAAGGACGGCTATGCTGCAGGCCGCTTGACATGAGAAGAAAAATATATG 3540
consensus_875#1      TT---------------------------------------------------------- 542
                     **                                                          

consensus_875#0      TAAAAAGGAGTTTTTGTTTCTCTCTCCTACAGCTGGCAGCATGTATGGATTATGGTCGTA 3600
consensus_875#1      ------------------------------------------------------------
                                                                                 

consensus_875#0      TGGATGTAGCCATGT 3615
consensus_875#1      ---------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)