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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1388 fasta sequence
[CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAAAAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGCGAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTTATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCACCATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCATGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAGTAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCACATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACGTGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCTTGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAACCTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGTTTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGTACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCATTTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATTTTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCGAATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGATAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAGGTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACT]
[+] EMBL AK108754 [CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAAAAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGCGAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTTATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCACCATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCATGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAGTAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCACATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACGTGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCTTGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAACCTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGTTTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGTACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCATTTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATTTTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCGAATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGATAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAGGTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACT]
consensusID : consensus_8754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence
[TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATGGAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACTCCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTGTAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA]
[+] EMBL CF337399 [TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATGGAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCT ]
[+] EMBL CF337395 [TTGAGAATGGCTTCCTCACCGCTGCTCCGATCCGCCGGCGGCGTGCTCCGGCGGTCGATCCATG ]
[-] EMBL CA760938 [ ATCCATGAAGCGCGGGAGCAATCCAGCCTCTTCTTCTTCCCCACCGCCACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGC TTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACTCCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTGTAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA]
[-] EMBL CF317943 [ CACCGATTTGGCTGGGAGGAGACAATCCGTCTACAAGCAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCGCGGCGCCTCTTCAGCTCCTCCGGTTGCAGCGGGAGGACGGAGCCCGCTGAGAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGAGGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCTTCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCCTCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGTTTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGTTAAATACTTTCTGGTGTTAAaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8754#0 CAAATTCCTAAGCATTTGGATCCAAATCCCTTGTATTCAAATAGGCCATTAGTTTTTTAA 60
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 AAAAATGCAGTACTCCTTTTTACTTCTTTTTGCTAATTTAAACAACATAAGAGTAGTGGC 120
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 GAGAGTAGTGGCAATAACCTAAGGAGGTAGATACCTTCTTCTTCACAATTTTAACCATTT 180
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 ATTTTTTAAACTATTCTGTTCAGCAACTTTAAATTAGACATACTCACCACAGTTCTTCAC 240
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 CATTGCCTCCAACAGCTGAAAATATTTCGTGACCAATATTAACAAGAAAAATCATAATCA 300
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TGGAGTACTCGCTGCCTTATCATATGCTGATAGCTCAACAGTGAGTCAGTGACAGATAAG 360
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TAAATGGGCATTGACAAACAAATTGATGTTAGTCACAGAAATAAAAACTGGAGGTTCTCA 420
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 CATGAAAATATTACACAAGGGTAGATATTGTGATTAAAATTGTAGCACGAACCATCAACG 480
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TGAAAAATTCAACTCTGGCATCCTTATGCTCCAACTGCTTCACAATTTTCTACCACGCCT 540
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TGGTTTGCCTGATTCAAAGTGGCTGATAGTATTCTGGGTGACCAGAGATTCAGAGGTAAC 600
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 CTTCCATCTACAAGTTATTTTTTGGAGATAATGCAGTTTTAGCAATTCAAACTGTCGAGT 660
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TTACCAATAAGAAATAAATAGAACATTTAATGTGTTTAGTGATGCAGTATTTTTCACTGT 720
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 ACTGTTCAAATTGAATGTCTACATTCTATATAGTTAAACTACAGAGAACTTTGAATGCAT 780
consensus_8754#1 ------------------------------------------------------------
consensus_8754#0 TTTTTTTACCATGAACAGCAACTTAGACTAAAAGTATAAACTGCCTTCAGACCTTGTATT 840
consensus_8754#1 ---------------------------------TTGAGAATGGCTTCCTCACC--GCTGC 25
* ** ** * * *** *
consensus_8754#0 TTCAATAACGAAAGTAGCAAGCTAAAGCAACCAGTAAAGCTACAACATATTTACATGGCG 900
consensus_8754#1 TCCGATC-CGCCGGCGGCGTGCTCCGGCGGTCGATCCA--TGGAGCGCGGGAGCAATCCA 82
* * ** ** * ** *** ** * * * * * * ** *
consensus_8754#0 AATTACTCAACAGATATAGCACGGCCTGATTTGCAACAAAAAAGAAAAGTAGAAAGAAGA 960
consensus_8754#1 GCCTCTTCTTCTTCCCCACCGCCACC-GATTTGGCTGGGAGGAGACAATCCGTCTACAAG 141
* ** * * * * ** ****** * *** ** * *
consensus_8754#0 TAGCATGCCTGTAATAAAAACAGATTAGTTTAACCATATTCTGTTAAAGGAGAGCAACAG 1020
consensus_8754#1 CAGGCGGCGTTCCCCTCCTCCTCCTTCGCCCGGCCATCGCTCGCGGTCGCGGACCACCCG 201
** ** * * ** * **** * * ** ** * *
consensus_8754#0 GTTATGGTAATCATTGTAAACCAGATTCTGATGCAAGTTACTGTTTTATTCCATCTCTCA 1080
consensus_8754#1 ----CGGCGCCTCTTCAGCTCC---TCCGGTTGCAGCGGGAGGACGGAGCCCG---CTGA 251
** ** ** * * * **** * * ** ** *
consensus_8754#0 GAAACTTTTATCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGA 1140
consensus_8754#1 GAAACTTTTGTCAATGGATGAGTTTTTGGAGCACAGAAGGCAATTCGGGAAGAACGGGGA 311
********* **************************************************
consensus_8754#0 GGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCT 1200
consensus_8754#1 GGAGGATACTTTTAGAGATGCAGAAATTTCAGAACATGAAAAGCGGGAGGAGAAGCTCCT 371
************************************************************
consensus_8754#0 TCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCC 1260
consensus_8754#1 TCGTAAAAGATTGTCATCTACTGTCAAAAAGTTGTCCCGTTGCTTACACGAGAAGAAGCC 431
************************************************************
consensus_8754#0 TCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGT 1320
consensus_8754#1 TCTAATTCTAGAAATTGGAGTTCAAATAGAAAACAATAATAAGTGCGTAGACCTCACTGT 491
************************************************************
consensus_8754#0 TTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGT 1380
consensus_8754#1 TTTGGATATGCTTTTTTTTGCTACTCTTCCTAATCATGTTTCTTGTATGTATGATCAAGT 551
************************************************************
consensus_8754#0 TAAATACT---------------------------------------------------- 1388
consensus_8754#1 TAAATACTTTCTGGTGTTAATCCCTAGCTTCGTTTCTATCGGTCTTATTCTTGATAAACT 611
********
consensus_8754#0 ------------------------------------------------------------
consensus_8754#1 CCATGTGTTTGGTTGACTCCAAAAAGAAGGGCAACTTCCAACGTAACTTTTATTCAAGTG 671
consensus_8754#0 ------------------------------------------------------
consensus_8754#1 TAAACCCATTTTTATATTTTGGTCATGACTTTTGGCTAGTAAAAAAAAAAAAAA 725
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||