These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1570 fasta sequence [TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC-TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC-ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA-CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC] [-] EMBL BQ908063 [TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGA ] [+] EMBL CB649722 [ GTTCAGCGGGTGAGTTTTCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTC ] [-] EMBL C73060 [ AAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCAACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGC ] [-] EMBL CB633306 [ GACGCCGCACCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGCAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC] consensusID : consensus_8755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG] [+] EMBL CB633307 [TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8755#0 TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACT 60 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 AGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCA 120 consensus_8755#1 --------------------------------------------------------TCTT 4 consensus_8755#0 AAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCCTTT-GGCAACGAAACACAA 179 consensus_8755#1 TTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAA 64 ************************* ***** *************** consensus_8755#0 GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 239 consensus_8755#1 GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 124 ************************************************************ consensus_8755#0 TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 299 consensus_8755#1 TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 184 ************************************************************ consensus_8755#0 CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 359 consensus_8755#1 CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 244 ************************************************************ consensus_8755#0 GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 419 consensus_8755#1 GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 304 ************************************************************ consensus_8755#0 CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 479 consensus_8755#1 CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 364 ************************************************************ consensus_8755#0 TCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCC 539 consensus_8755#1 TCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCC 424 ****************************** ***************************** consensus_8755#0 GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 599 consensus_8755#1 GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 484 ************************************************************ consensus_8755#0 CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 659 consensus_8755#1 CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 544 ************************************************************ consensus_8755#0 CGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 719 consensus_8755#1 CGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 604 *** ******************************************************** consensus_8755#0 CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 779 consensus_8755#1 CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 664 ************************************************************ consensus_8755#0 CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 839 consensus_8755#1 CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 724 ************************************************************ consensus_8755#0 GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGA 899 consensus_8755#1 GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG----------------------- 761 ************************************* consensus_8755#0 CGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCG 959 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 CGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGA 1019 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 GCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGT 1079 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 CCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCG 1139 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 GCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCA 1199 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 GCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGC 1259 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 GCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCC 1319 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 TGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACG 1379 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 CGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCG 1439 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 CCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCG 1499 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 CGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGG 1559 consensus_8755#1 ------------------------------------------------------------ consensus_8755#0 ACACCGGCCGC 1570 consensus_8755#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||