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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1570 fasta sequence
[TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC-TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC-ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA-CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC]
[-] EMBL BQ908063 [TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGA ]
[+] EMBL CB649722 [ GTTCAGCGGGTGAGTTTTCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTC ]
[-] EMBL C73060 [ AAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCAACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGC ]
[-] EMBL CB633306 [ GACGCCGCACCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGCAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC]
consensusID : consensus_8755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence
[TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG]
[+] EMBL CB633307 [TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8755#0 TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACT 60
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 AGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCA 120
consensus_8755#1 --------------------------------------------------------TCTT 4
consensus_8755#0 AAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCCTTT-GGCAACGAAACACAA 179
consensus_8755#1 TTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAA 64
************************* ***** ***************
consensus_8755#0 GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 239
consensus_8755#1 GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 124
************************************************************
consensus_8755#0 TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 299
consensus_8755#1 TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 184
************************************************************
consensus_8755#0 CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 359
consensus_8755#1 CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 244
************************************************************
consensus_8755#0 GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 419
consensus_8755#1 GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 304
************************************************************
consensus_8755#0 CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 479
consensus_8755#1 CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 364
************************************************************
consensus_8755#0 TCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCC 539
consensus_8755#1 TCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCC 424
****************************** *****************************
consensus_8755#0 GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 599
consensus_8755#1 GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 484
************************************************************
consensus_8755#0 CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 659
consensus_8755#1 CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 544
************************************************************
consensus_8755#0 CGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 719
consensus_8755#1 CGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 604
*** ********************************************************
consensus_8755#0 CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 779
consensus_8755#1 CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 664
************************************************************
consensus_8755#0 CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 839
consensus_8755#1 CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 724
************************************************************
consensus_8755#0 GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGA 899
consensus_8755#1 GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG----------------------- 761
*************************************
consensus_8755#0 CGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCG 959
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 CGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGA 1019
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 GCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGT 1079
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 CCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCG 1139
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 GCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCA 1199
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 GCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGC 1259
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 GCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCC 1319
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 TGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACG 1379
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 CGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCG 1439
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 CCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCG 1499
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 CGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGG 1559
consensus_8755#1 ------------------------------------------------------------
consensus_8755#0 ACACCGGCCGC 1570
consensus_8755#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||