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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 941 fasta sequence
[CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG-AGATGAGGGGGAG-ATGTGGCTGAG-AACAGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC]
[+] EMBL CB640579 [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGT ]
[+] EMBL CB640585 [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAAT ]
[+] EMBL AU056111 [ TACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG AGATGAGGGGGAG ATGTGGCTGAG AACAGGTNCCCCCNGCAAAGCAATACCGAGC ]
[+] EMBL D43577 [ GGAAAACGATCCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCGAAGATGAGGGGGAGAATGTGTCTGAGAAACAGGTCCCCCCTGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC]
consensusID : consensus_8756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT]
[+] EMBL CA763986 [AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8756#0 ------------------------------------------------------------
consensus_8756#1 AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGA 60
consensus_8756#0 ------------------------------------------------------------
consensus_8756#1 GAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGG 120
consensus_8756#0 --------------------------------------------------CAAGTGGTGC 10
consensus_8756#1 TCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGC 180
**********
consensus_8756#0 AGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 70
consensus_8756#1 AGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 240
******** ***************************************************
consensus_8756#0 ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 130
consensus_8756#1 ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 300
************************************************************
consensus_8756#0 ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 190
consensus_8756#1 ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 360
************************************************************
consensus_8756#0 TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 250
consensus_8756#1 TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 420
************************************************************
consensus_8756#0 ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 310
consensus_8756#1 ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 480
************************************************************
consensus_8756#0 AG---------------------------------------------------------- 312
consensus_8756#1 AGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTT 540
**
consensus_8756#0 -----------------TTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 355
consensus_8756#1 TCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 600
*******************************************
consensus_8756#0 AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTT 415
consensus_8756#1 AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTT 660
************************************* *************** ******
consensus_8756#0 TGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 475
consensus_8756#1 TGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 720
************************ ***********************************
consensus_8756#0 CTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCT 535
consensus_8756#1 CTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCT 780
********** ************************* *** *******************
consensus_8756#0 CTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACA 595
consensus_8756#1 CTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACAC 840
*************************** * ** ********** **** ***** **
consensus_8756#0 CGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCAC 655
consensus_8756#1 CNCAATCTGCAGNTAGGNTGGATCAGGNAAACG--GGATGGGGCT--------------- 883
* ******** * **** ********* ***** * * ***
consensus_8756#0 AACAAAGTAGTGATCCTGTACCTATTTCTGCCGAGATGAGGGGGAGATGTGGCTGAGAAC 715
consensus_8756#1 ------------------------------------------------------------
consensus_8756#0 AGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAA 775
consensus_8756#1 ------------------------------------------------------------
consensus_8756#0 TTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTC 835
consensus_8756#1 ------------------------------------------------------------
consensus_8756#0 AACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTN 895
consensus_8756#1 ------------------------------------------------------------
consensus_8756#0 GAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC 941
consensus_8756#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||