cluster # 8757

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Oryza sativa
cluster # 8757 cluster # 8757 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8757#0 length = 788 sequences # 3

consensus_8757#1 length = 668 sequences # 1
consensus_8757#2 length = 252 sequences # 1

consensusID : consensus_8757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 788
fasta sequence

                              [TGCAAGTTGCAACTACATTGCTTCTAGAAAGATATCAGTTTATTCATGGGTGTTGACTAAAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGTGGATATGAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTAGTATCAGTGGACCCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATGGCAACGATATCCCTCTTTTCACGGTCATAAGAGAGCCCATCAGTGGTAAGGAAACAACGAT]

[+] EMBL CB637599             [TGCAAGTTGCAACTACATTGCTTCTAGAAAGATATCAGTTTATTCATGGGTGTTGACTAAAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGTGGATATGAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTATTATCAGTGGACCCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAA                                                                                                                                                                                                                        ]
[+] EMBL CB619944             [                               tTATCAGTTTATTCATGGGTCTTGACTAAAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGTGGATATGAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTAGTATCAGTGGACCCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATGGCAACGATATCCCTCTTTTCACGGTCATAAGAGAGCCCATCAGTGGTAAGGAAACAACGAT]
[-] EMBL CF295051             [                                                                                                                                                                                                                                                                                                                                                  CATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTAGTATCAGTGGACCCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTC                                                                                  ]




>consensus_8757#0
TGCAAGTTGCAACTACATTGCTTCTAGAAAGATATCAGTTTATTCATGGGTGTTGACTAA
AGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGG
AGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACT
AGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATG
ATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGTGGATATGA
ACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTC
CCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGC
CAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTAGTATCAGTGGAC
CCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGT
GTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACA
ATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAA
GATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTC
ATCGATGGCAACGATATCCCTCTTTTCACGGTCATAAGAGAGCCCATCAGTGGTAAGGAA
ACAACGAT

consensusID : consensus_8757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [AAAGCAGTAACAGAATTTACACTTTGAAAAATAGGGTGTTAATTGTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACCAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGGAAAACTGTTTAAAAATTTCATACATGGGGAATGATGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGGGGATATGAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATAGCAACGATATCCCTCTGACAAAGGAATGCCAATTTGAACCCATATGCAGACAAACTCATTCTTAATGGCAGACAGG]

[+] EMBL CB632589             [AAAGCAGTAACAGAATTTACACTTTGAAAAATAGGGTGTTAATTGTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACCAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGGAAAACTGTTTAAAAATTTCATACATGGGGAATGATGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGGGGATATGAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGTCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATGCCAATAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATAGCAACGATATCCCTCTGACAAAGGAATGCCAATTTGAACCCATATGCAGACAAACTCATTCTTAATGGCAGACAGG]




>consensus_8757#1
AAAGCAGTAACAGAATTTACACTTTGAAAAATAGGGTGTTAATTGTACACCGAGATATAT
GGAGAAAATATCAAGAATCTACAGGATCTCCTACCAATAAAATAAACTGTAAAGAAAGCA
CTAGCTAAAACTCAAAAACAAATGGGAAAACTGTTTAAAAATTTCATACATGGGGAATGA
TGATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGGGGATAT
GAACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGG
TCCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACAT
GCCAATAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCA
TCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCAT
ACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTC
CAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATAGCAACGAT
ATCCCTCTGACAAAGGAATGCCAATTTGAACCCATATGCAGACAAACTCATTCTTAATGG
CAGACAGG

consensusID : consensus_8757#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [TGCAACTGCAATGTTTCTAGAAAGATTATCAGTTTATTCATGGGTGTGACTAAAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCCGGACGCGTGGGCGG]

[-] EMBL BQ908197             [TGCAACTGCAATGTTTCTAGAAAGATTATCAGTTTATTCATGGGTGTGACTAAAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCCGGACGCGTGGGCGG]




>consensus_8757#2
TGCAACTGCAATGTTTCTAGAAAGATTATCAGTTTATTCATGGGTGTGACTAAAGCAGTA
ACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATGGAGAAAAT
ATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCACTAGCTAAA
ACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGATGATCCCGG
ACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8757#0      TGCAAGTTGCAACTACATTGCTTCTAGAAAGAT-ATCAGTTTATTCATGGGTGTTGACTA 59
consensus_8757#2      -------TGCAACTGCAATGTTTCTAGAAAGATTATCAGTTTATTCATGGGTGT-GACTA 52
consensus_8757#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_8757#0      AAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATG 119
consensus_8757#2      AAGCAGTAACAGAATTTACAAAGTGAAAAATAGGGTGTTAATTCTACACCGAGATATATG 112
consensus_8757#1      AAGCAGTAACAGAATTTACACTTTGAAAAATAGGGTGTTAATTGTACACCGAGATATATG 61
                      ********************   ******************** ****************

consensus_8757#0      GAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCAC 179
consensus_8757#2      GAGAAAATATCAAGAATCTACAGGATCTCCTACAAATAAAATAAACTGTAAAGAAAGCAC 172
consensus_8757#1      GAGAAAATATCAAGAATCTACAGGATCTCCTACCAATAAAATAAACTGTAAAGAAAGCAC 121
                      ********************************* **************************

consensus_8757#0      TAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGAT 239
consensus_8757#2      TAGCTAAAACTCAAAAACAAATGGTAAAACTGTTTAGAGATTTCATACATGGTGAATGAT 232
consensus_8757#1      TAGCTAAAACTCAAAAACAAATGGGAAAACTGTTTAAAAATTTCATACATGGGGAATGAT 181
                      ************************ *********** * ************* *******

consensus_8757#0      GATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGTGGATATG 299
consensus_8757#2      GATCCCGG-----ACGCGTGGGCGG----------------------------------- 252
consensus_8757#1      GATCCTGGTGTAAAATTGTTGATGCTTGCAGGGAGACCTTGCTGTCACAGGGGGGATATG 241
                      ***** **     *   ** *  *                                    

consensus_8757#0      AACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGT 359
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      AACAGGAGTTCCATAATTTTATCCCCTGATGCATGATCACATAGTCATTCTGCAAATGGT 301
                                                                                  

consensus_8757#0      CCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATG 419
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      CCCCACTGGAACAAGTCCAAACCACTGCTGGTCCCAATTCACGGCATTAATGTGCACATG 361
                                                                                  

consensus_8757#0      CCAATAACCTGCATGTCGATGCACCGTTAAAAGATTCAGACGTGATCTAGTATCAGTGGA 479
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      CCAATAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAGTGTGTCACAGACACCAT 421
                                                                                  

consensus_8757#0      CCCAAGATCAAACCAGTGCTCTAACCATACGAAAGCCTCCGTAATGTATGCTGTTGCCAG 539
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      CATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAACAATTCAAACGATGCATA 481
                                                                                  

consensus_8757#0      TGTGTCACAGACACCATCATGAGCTCAATTCAACATGACATGTTTTCTGCATGTGACAAC 599
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      CGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTAAGATCAAGAACAGCTCC 541
                                                                                  

consensus_8757#0      AATTCAAACGATGCATACGGGCATGAACCTGCGCTGAGCCAACTTGTGACCGGGGTGCTA 659
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      AGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGTCATCGATAGCAACGATA 601
                                                                                  

consensus_8757#0      AGATCAAGAACAGCTCCAGATGGTCCCTAGCAATCCTCAACCATGTCGTTTCAGTCTTGT 719
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      TCCCTCTGACAAAGGAATGCCAATTTGAACCCATATGCAGACAAACTCATTCTTAATGGC 661
                                                                                  

consensus_8757#0      CATCGATGGCAACGATATCCCTCTTTTCACGGTCATAAGAGAGCCCATCAGTGGTAAGGA 779
consensus_8757#2      ------------------------------------------------------------
consensus_8757#1      AGACAGG----------------------------------------------------- 668
                                                                                  

consensus_8757#0      AACAACGAT 788
consensus_8757#2      ---------
consensus_8757#1      ---------