|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1003 fasta sequence
[ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC---GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG-CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC-TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG]
[+] EMBL CB662791 [ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTTACTAGCTACGATCATATCGATGGAATCATC ]
[-] EMBL CB662792 [ TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGCCATGGACCCTATTAGCTAGCTTTTTTTTTTTCTCTTCTCCTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG]
[-] EMBL CB629361 [ TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTGCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGA A GACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAG TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGT ]
[+] EMBL BQ908261 [ gTGC AACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCCATTTAGCTAGATAGATTGGA GACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCCAAGC ACTGTTGCCAATGTGTTGTCCCATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGC TTGCATGTCCAGCCTACGTGCTTTATTTTCGAGCTAaaaaaa ]
consensusID : consensus_8761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT]
[-] EMBL CB966889 [AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8761#0 ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAG 60
consensus_8761#1 ---AGATGAGCCTCCTGCGTTGCCAAGATGG---TCTGAGTGCTCTTCACGGCGACGCGT 54
* *** * *** * **** * ** * * * * ***** **
consensus_8761#0 CGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCC 120
consensus_8761#1 CCC-CGACGTCGGCGGCG-GCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTG---CC 109
* *** * ** ** * ** ** * * * * * * * *** * **
consensus_8761#0 GGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCG 180
consensus_8761#1 GGCCATCGCCGGCGCGACGC--ACGACGACGGCGGGCTC------CTCGATAGGTTCGCG 161
*** * * *** ** ** ***** * ** * *** * * ***
consensus_8761#0 CTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGC 240
consensus_8761#1 TTCCCGAACGTTGCCGAGACGA-CGACCGTGCAA-GCCGCCGCGTCGAAC-ACCGCCTTC 218
* ** * ** **** ** * **** ** * ** *** * *** * *
consensus_8761#0 GCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAG 300
consensus_8761#1 TCCGGATACAGCAGCAACACCACCGGCGGCGGCAA------CATCTCCTCCGGCGAGTCG 272
*** ** * ** * * ** ** ** **** *********** * * *
consensus_8761#0 ACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAG 360
consensus_8761#1 A--ACACCTACACGGAGGTGGCG--------TCGACG-----CCGTGCGCCGTGTCGA-- 315
* * * *** * **** ** ** * * *** * ** **
consensus_8761#0 CTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTAC 420
consensus_8761#1 --------CGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAA 367
** ** ** * * * * * *** ** * * ** ** *** *
consensus_8761#0 CTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTA-GAC--CGCCGGAACTAC 477
consensus_8761#1 GTACCCCGTCGTAGG---CACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAG 424
* * * * * * ** ***** * * * ** * * *** ** **** *
consensus_8761#0 CCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCA 537
consensus_8761#1 CCGCAGAGCGCCG-GAGCACCAAGAGAGCGGCCGGGGGCAGCA--GCAGCATCACGTTCG 481
*** * **** * ** *** * ** **** ** ** ** **** ****
consensus_8761#0 CCAAC--CTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTC--CCGGAAACCCT 593
consensus_8761#1 GCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACG 541
* * * * ** * * ** ** * * *** * ** *** *
consensus_8761#0 AG---GATGCGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATT 650
consensus_8761#1 AGCCGGACACGGAGGCGATAGCG-CAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATG 600
** ** ****** * * * * * ** * *** * ** ***
consensus_8761#0 GGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCAT 710
consensus_8761#1 CGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCAT-CGGCGGCGCCGCC 659
* * * * ** ** ** ** * * ** * * ******
consensus_8761#0 GCAAAGCAACTGTTGCAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCAT 770
consensus_8761#1 GCCGCCCCAGCGCCGCAGCGTATGTCCCT------------------------------- 688
** * * * *** ** * **
consensus_8761#0 TGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATG 830
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 GACCCTATTAGCTAGCTTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGT 890
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 CATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGC 950
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 TTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG 1003
consensus_8761#1 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||