cluster # 8764

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Oryza sativa
cluster # 8764 cluster # 8764 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8764#0 length = 1015 sequences # 4

consensus_8764#1 length = 361 sequences # 1

consensusID : consensus_8764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1015
fasta sequence

                              [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC-GAC-GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA---GAGGAAGAGAAGAACGAGCTAGACGAC-GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA]

[+] EMBL AK069900             [CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCA   GAGGAAGAGAAGAACGAGCTAGACGAC GACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACA                 ]
[+] EMBL AU172789             [ AAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCNGACNGGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BE040395             [                   aTCTCCTGGGTGATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGC GAC GGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCGGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCANGCCGTGGAGGTGGCGGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACCGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGTGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGTCACCCAAGAAAGGCACTGATGAAGACGACCAAAAAGATGAAGATGGTGCANAGGAGGAAGAGAAG ACNAGCTANACGAC GACATCTAGGCCACCCGTCCAATGGATGGATGGGTGGGTAATTCCT  TCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAATATCCATTGATTCTGGTGGGGGGGA   TCTAGTACTAGAACTACTAGTGGCTGCAGTGTGACCTGC CCTCAAGTGAATG ATGGATGAATG                                                                                                                                                                                         ]
[+] EMBL AU172790             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGAAGATGGTGCA   GAGGAAGAGAAGAACGAGCTAGACGACGGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACTCATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA]




>consensus_8764#0
CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAG
GAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTT
CACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTG
CAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGA
GGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAA
AAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTA
CAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAG
GTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAA
GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA
GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA
TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA
TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT
GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT
ACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGAC
TTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTC
AAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT
CATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA

consensusID : consensus_8764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC]

[-] EMBL AU225712             [GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC]




>consensus_8764#1
GCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGC
AGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGA
TGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCC
AATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGC
TAGTATGCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACT
AGAACTACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGG
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8764#0      CAAATCCATAGCCCTCCTCCTCTCCTCTGTAATGGCGGGGAAATCCGGCGCACGCACGAG 60
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTT 120
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTG 180
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGA 240
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAA 300
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      AAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTA 360
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAG 420
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      GTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAA 480
consensus_8764#1      ------------------------------------------------------GCTCAA 6
                                                                            ******

consensus_8764#0      GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 540
consensus_8764#1      GGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGA 66
                      ************************************************************

consensus_8764#0      GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 600
consensus_8764#1      GCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGA 126
                      ************************************************************

consensus_8764#0      TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 660
consensus_8764#1      TGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAGGCCACCGGTCCAATGGA 186
                      ************************************************************

consensus_8764#0      TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 720
consensus_8764#1      TGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT 246
                      ************************************************************

consensus_8764#0      GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 780
consensus_8764#1      GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACT 306
                      ************************************************************

consensus_8764#0      ACTAGTGCTTGCAGTGTGACCTGCACATCAAGTGAATGAATGAATGAATGATTAGACGAC 840
consensus_8764#1      ACTAGTGCTTGCAGTGTGACCTGCACATCAAGGAAGTAAGTAAGTAAGTAGCGGC----- 361
                      ********************************  * * * * * * * *           

consensus_8764#0      TTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAACTTCTTCCCCATTCCATTCTC 900
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      AAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT 960
consensus_8764#1      ------------------------------------------------------------
                                                                                  

consensus_8764#0      CATGACTTGTATCTGATTTCATCAACTTAATTGAAACAACAAATGCTGATAAAAA 1015
consensus_8764#1      -------------------------------------------------------