cluster # 8768

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Oryza sativa
cluster # 8768 cluster # 8768 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8768#0 length = 837 sequences # 4

consensus_8768#1 length = 493 sequences # 1

consensusID : consensus_8768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 837
fasta sequence

                              [CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAAAGTATATTCAATTTTNGCC]

[+] EMBL CF305157             [CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAA                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK063722             [   AGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCAAT       ]
[-] EMBL CA761989             [                                                                                                                                                                                                                                                            AAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACCGAATTAACTTAAAAaaaaa             ]
[+] EMBL CA767272             [                                                                                                                                                                                                                                                                          GGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATTGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGNGGATGTTACNATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAANTGAGTCATACTGAATTANCTTAAANGTATATTCATGTTTNGCC]




>consensus_8768#0
CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCG
CCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTC
CAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGC
GAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTC
GCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATA
GCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTC
TCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCT
TACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATG
GGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTG
AGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGA
ACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGT
AATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGA
GAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGA
TTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAAAGTATATTCAATTTTNGCC

consensusID : consensus_8768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [TTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCTCTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCCAAAAAAAAA]

[+] EMBL BQ908962             [TTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCTCTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCCAAAAAAAAA]




>consensus_8768#1
TTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATT
CCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAA
AATGGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGG
GTCTGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAG
CCTCTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATG
CATTTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTAC
CAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGA
ATCAGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATA
TTCCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8768#0      CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCG 60
consensus_8768#1      ------------------------------------------------------------
                                                                                  

consensus_8768#0      CCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTC 120
consensus_8768#1      ------------------------------------------------------------
                                                                                  

consensus_8768#0      CAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGC 180
consensus_8768#1      ------------------------------------------------------------
                                                                                  

consensus_8768#0      GAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTC 240
consensus_8768#1      ------------------------------------------------------------
                                                                                  

consensus_8768#0      GCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATA 300
consensus_8768#1      ------------------------------------------------------------
                                                                                  

consensus_8768#0      GCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTC 360
consensus_8768#1      ---------------------------------------------------------TTC 3
                                                                               ***

consensus_8768#0      TCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCT 420
consensus_8768#1      TCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCT 63
                      ************************************************************

consensus_8768#0      TACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATA-TCAAAAAT 479
consensus_8768#1      TACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAAT 123
                      *************************************************** ** *****

consensus_8768#0      GGGAGTGACGAGCGTGCTGGTGGAGAAC-GGGGTGAATCTTGACATGTTTAAGTTGGGTC 538
consensus_8768#1      GGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTC 183
                      **************************** *******************************

consensus_8768#0      TGAGTAACTTTGCC--ACAAATGTTGCTGCC-TCGAGCACAAGTAAAGATG-AATAGCCT 594
consensus_8768#1      TGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCT 243
                      **************  *************** ******************* ********

consensus_8768#0      C-ATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCAT 653
consensus_8768#1      CTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCAT 303
                      * ******************     ***********************************

consensus_8768#0      TTCTTG--TAATTTA-TATTGCCCTTGCTCATGTAC-GAGATGGAGTATTTGAGTAC-AG 708
consensus_8768#1      TTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAG 363
                      ****    ******* ******************** ******************** **

consensus_8768#0      GATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATC 768
consensus_8768#1      GATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATC 423
                      ************************************************************

consensus_8768#0      AGATGAATTTG-ATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAAAGTATATTC 827
consensus_8768#1      AGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTC 483
                      *********** *************************************** ********

consensus_8768#0      AATTTTNGCC 837
consensus_8768#1      CAAAAAAAAA 493
                       *