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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1632 fasta sequence
[GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT-TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA-GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGCCAACCAGTTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCGGATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTTGAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAAGCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGATCCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAATGATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATAATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGACACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTAGAAAGCACCAGG]
[+] EMBL CF335339 [GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGTNTTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTC ACCAAGGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTT ]
[+] EMBL AU056041 [ AATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCA GAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAAGGGCACTCAATCTTTACNGCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGC ]
[+] EMBL AK067589 [ TCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTTT GGATTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGCCGCCAACCAGTTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCGGATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTTGAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAAGCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGATCCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAATGATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATAATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGACACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTAGAAAGCACCAGG]
consensusID : consensus_8771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[GAAAGTGGAAGCCCAATTGTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGATACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCATTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGACTGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGGTGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCCCTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGACCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF335340 [GAAAGTGGAAGCCCAATTGTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGATACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCATTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGACTGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGGTGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCCCTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGACCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056042 [CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8771#0 GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCC 60
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 ATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGG 120
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 CTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAG 180
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 CCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCA 240
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAG 300
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 TGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGA 360
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 ATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGA 420
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 TAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGTT 480
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 TGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCA 540
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 ATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAAGGCACTCAATCTTTACC 600
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACT 660
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGCCAACCAG 720
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 TTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCG 780
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTT 840
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAA 900
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGAT 960
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 CCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAAT 1020
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 GATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATA 1080
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 ------------------------------------------------------------
consensus_8771#0 ATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATT 1140
consensus_8771#2 -------CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATT 53
consensus_8771#1 ------------------------------------------GAAAGTGGAAGCCCAATT 18
* * ******** *****
consensus_8771#0 GTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGAT 1200
consensus_8771#2 GTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGAT 113
consensus_8771#1 GTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGAT 78
************** *********** ************************* *******
consensus_8771#0 ACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCA 1260
consensus_8771#2 ACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCA 173
consensus_8771#1 ACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCA 138
******************** ********* ****************** ****** ***
consensus_8771#0 ATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGAC 1320
consensus_8771#2 ATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGAC 233
consensus_8771#1 TTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGAC 198
* ***************************** ********************** ****
consensus_8771#0 TGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGG 1380
consensus_8771#2 TGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGG 293
consensus_8771#1 TGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGG 258
************** ********** ******** ***** *******************
consensus_8771#0 TGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCAC 1440
consensus_8771#2 TGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCAC 353
consensus_8771#1 TGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCC 318
** ****** **************************** ********** ******* *
consensus_8771#0 CTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGAT 1500
consensus_8771#2 CTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAA 413
consensus_8771#1 CTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGAT 378
******************** **** ****************** * **** ***** *
consensus_8771#0 CGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGA 1560
consensus_8771#2 AAAAAAAAAAAAAA---------------------------------------------- 427
consensus_8771#1 CGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGA 438
*
consensus_8771#0 CACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTA 1620
consensus_8771#2 ------------------------------------------------------------
consensus_8771#1 CCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAA 498
consensus_8771#0 GAAAGCACCAGG--- 1632
consensus_8771#2 ---------------
consensus_8771#1 AAAAAAAAAAAAAAA 513
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||