These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1632 fasta sequence [GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT-TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA-GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGCCAACCAGTTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCGGATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTTGAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAAGCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGATCCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAATGATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATAATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGACACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTAGAAAGCACCAGG] [+] EMBL CF335339 [GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGTNTTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTC ACCAAGGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTT ] [+] EMBL AU056041 [ AATCCCCGTCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCA GAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAAGGGCACTCAATCTTTACNGCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGC ] [+] EMBL AK067589 [ TCATCTCCAAGAGCCTTCACCCATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGGCTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAGCCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCAGTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAGTGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGAATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGATAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGT TTGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCAATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAA GGCACTCAATCTTTACCGCAAGAAAACTGGAACTGACAACTTTTTTT GGATTCATCTTGATAAGAAGGTCCCTACTGGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGCCGCCAACCAGTTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCGGATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTTGAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAAGCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGATCCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAATGATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATAATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGACACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTAGAAAGCACCAGG] consensusID : consensus_8771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [GAAAGTGGAAGCCCAATTGTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGATACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCATTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGACTGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGGTGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCCCTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGACCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF335340 [GAAAGTGGAAGCCCAATTGTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGATACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCATTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGACTGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGGTGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCCCTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGATCGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGACCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU056042 [CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATTGTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGATACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCAATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGACTGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGGTGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCACCTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8771#0 GTCGACGACCTCTTGACCGAAGCGGCGCTCAATCCCCGTCATCTCCAAGAGCCTTCACCC 60 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 ATTGCGCTCCTCTTCGCCTCTGGTAAGCAGCAGCAGCAGCATCCGCAGGAGCAGCCATGG 120 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 CTTGCTCCACCCACCTCCTGTCCCAGAGCCTCTACCCGCTCAACCGCGCTAACCCGGCAG 180 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 CCGCGCGCGGGCACCTCCGGTTCCAGGCTTCTCCCAGTGTGAGGCTCGGCTCCGGCACCA 240 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GTCGCCGCCGGGCGCTGGGCCTGAGAGTCGCCGCGTCGGCGGAGCAAGGGAGGAGGCAAG 300 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 TGGAGGTTGAGTATGATCTACAAGCAAAGTTCAACAAGCTAGCGGACCAAATTGACCAGA 360 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 ATGCTGGGATTACACGGCTGAACCTATTCTCACCTTGCAAAATTAATGTGTTCTTGAGGA 420 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 TAACGGGTAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCATGTGATAAGTT 480 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 TGGGTGATACTATCAAATTCTCATTGTCACCAAGTAAGAGCAAAGATCGCTTGTCAACCA 540 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 ATGTAGCAGGTGTCCCAGTTGATGAAAGCAATTTGATCATCAAGGCACTCAATCTTTACC 600 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GCAAGAAAACTGGAACTGACAACTTTTTTTGGGNTTCATCTTGATAAGAAGGTCCCTACT 660 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GGTGCTGGTCTTGGTGGTGGAAGCAGTAATGCTGCAACTGCGCTGTGGGGCGCCAACCAG 720 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 TTTAGTGGCTGCATTGCTTCAGAAAAGGAGCTTCAGGAGTGGTCTGGAGAGATAGGATCG 780 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GATATTCCCTTCTTCTTTTCACAAGGAGCAGCGTATTGTACCGGTAGAGGAGAGATTGTT 840 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GAAGATATTCGGAATCCATTGCCAGCAAATTTGCCGATGGTACTAGTAAAGCCACCTGAA 900 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GCATGCTCAACAGCTGAAGTTTACAAGCGGCTCAGGTTAGAGCACACAAGTCAAACTGAT 960 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 CCCTTGGTATTGCTCAAGGAAATTACTGAAAATGGGATATCACAGGATGCCTGTGTTAAT 1020 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 GATCTAGAACCTCCAGCATTTGAGGTGTTGCCATCACTAAAGAGGTTGAAGAAACGTATA 1080 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 ------------------------------------------------------------ consensus_8771#0 ATTGCTGCTAACCGGGGAGATTATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACAATT 1140 consensus_8771#2 -------CTAACCGGGGAGATTATGATNCTGTTTTTATGTCAGGANGTGGAAGCACAATT 53 consensus_8771#1 ------------------------------------------GAAAGTGGAAGCCCAATT 18 * * ******** ***** consensus_8771#0 GTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGAT 1200 consensus_8771#2 GTTGGGATTGGTTCACCAGATCCGCCTGCATTTGTGTATGATGATGATGACTACAAGGAT 113 consensus_8771#1 GTTGGGATTGGTTCCCCAGATCCGCCGGCATTTGTGTATGATGATGATGACTCCAAGGAT 78 ************** *********** ************************* ******* consensus_8771#0 ACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTACAGAGAACCA 1260 consensus_8771#2 ACTTTTGTGTCAGAGGCCTGCTTCCTCACTCGTAATGAGAACGAGTGGTNCAGAGAACCA 173 consensus_8771#1 ACTTTTGTGTCAGAGGCCTGTTTCCTCACTGGTAATGAGAACGAGTGGTACAGAGACCCA 138 ******************** ********* ****************** ****** *** consensus_8771#0 ATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGAC 1320 consensus_8771#2 ATCTCATCGAAAATCACTAGCGAGGAAGATTTACCTCCGGAGGTAGCATCAGTTTCTGAC 233 consensus_8771#1 TTTTCATCGAAAATCACTAGCGAGGAAGATTTCCCTCCGGAGGTAGCATCAGTTTTTGAC 198 * ***************************** ********************** **** consensus_8771#0 TGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGG 1380 consensus_8771#2 TGAGGGAGTGGATTCTATATTAGATCTCATTTTGCGGTTATACAGGATACAACATACAGG 293 consensus_8771#1 TGAGGGAGTGGATTTTATATTAGATTTCATTTTGGGGTTAAACAGGATACAACATACAGG 258 ************** ********** ******** ***** ******************* consensus_8771#0 TGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCAC 1440 consensus_8771#2 TGTGCACTCACTGTGATTAGCTTTAAAATGGTACTTCCACTAGGAAAAGAACCATTCCAC 353 consensus_8771#1 TGGGCACTCCCTGTGATTAGCTTTAAAATGGTACTTCCCTTAGGAAAAGACCCATTCCCC 318 ** ****** **************************** ********** ******* * consensus_8771#0 CTTGAAATTTGTTAACGGGACTAGGAGTATCAATCATTGATTTTGAAGTGTAGGTAAGAT 1500 consensus_8771#2 CTTGAAATTTGTTAACGGGACTAGGNGTATCAATCATTGATTTTGANGTGTNGGTAAAAA 413 consensus_8771#1 CTTGAAATTTGTTAACGGGATTAGGAGTATCAATCATTGATTTTAAAGTGTAGGTAAGAT 378 ******************** **** ****************** * **** ***** * consensus_8771#0 CGTTTACTGTGTGTATTTGCAGCATGCGTCGTAGAAACTTGTTACGGGCATACCAAGTGA 1560 consensus_8771#2 AAAAAAAAAAAAAA---------------------------------------------- 427 consensus_8771#1 CGTTTACTGTGTGTATTTGCAGCATGCGTGGTAAAAACTTGTTACGGGCATACCAAGTGA 438 * consensus_8771#0 CACACTTGATATGACAGAATACATCCTCCCTGCAAAAACTGCTTGCACTTCCTGTGAGTA 1620 consensus_8771#2 ------------------------------------------------------------ consensus_8771#1 CCCCCTTGATATGCCAGAATACATCCTCCCTGCAAAAACTGTTTGCAAAAAAAAAAAAAA 498 consensus_8771#0 GAAAGCACCAGG--- 1632 consensus_8771#2 --------------- consensus_8771#1 AAAAAAAAAAAAAAA 513 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||