These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 840 fasta sequence [ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG-CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG-CCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGAGGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCTGCTGCCGCT] [+] EMBL CB967236 [ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG CCGGCGAGCAGCGCGCAAATGACGAACAACCCCGTCGCCAGG ] [+] EMBL CB967178 [ CGTACTCACAAGCTTTAG TTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG CCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGC ] [-] EMBL CF335019 [ CTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTACCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACGCCCGGCGAGCAG GCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCACCGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGATGGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGAGGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCTGCTGCCGCT] consensusID : consensus_8775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCT] [-] EMBL AK062513 [TTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCT] consensusID : consensus_8775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TTTTTTAATCACAAGCTTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA] [+] EMBL CF335020 [TTTTTTAATCACAAGCTTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8775#0 ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGA 60 consensus_8775#2 TTTTTTAATCACAAGCTTTAGAT-----CAAACTTAATTAAAAGAATTAACCGCCGGAGA 55 consensus_8775#1 ----------------TTTAGAT-----CAAACTTAATTAAAAGAATTAACCGCCGGAGA 39 ******* ******************************** consensus_8775#0 CAATT-ACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACA 119 consensus_8775#2 CAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACA-ACACA 114 consensus_8775#1 CAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACA-ACACA 98 ***** ************************************************ * *** consensus_8775#0 CTAGCATAAATC--CACAACGTTCCTCCTCACGCGCGTACACGTACGTACGC-------- 169 consensus_8775#2 CTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGT 174 consensus_8775#1 CTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGT 158 ************ ************************************** consensus_8775#0 ----CACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAA--TCCTC 223 consensus_8775#2 ACACCACAAACCAAACCGTCGCCCAAGATTGATA---CGGTTTTGCACAGAATCCTCCTC 231 consensus_8775#1 ACACCACAAACCAAACCGTCGCCCAAGATTGATA---CGGTTTTGCACAGAATCCTCCTC 215 ****************************** *********** *** ***** consensus_8775#0 CTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCG 283 consensus_8775#2 CTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTA 291 consensus_8775#1 CTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTA 275 ****** ********************************************* ***** consensus_8775#0 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 343 consensus_8775#2 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 351 consensus_8775#1 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 335 ************************************************************ consensus_8775#0 TGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACG 403 consensus_8775#2 TGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACG 411 consensus_8775#1 TGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACT---GGGACC 392 ************* * * * ** ***** ** ** ** * ** consensus_8775#0 CCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA 463 consensus_8775#2 CCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA 471 consensus_8775#1 CCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACA 452 ** * * * ** * * ** ***** * * * *** consensus_8775#0 TCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGC 523 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ACGGCGTCGCGAGAAAACACACTCTGCT-------------------------------- 480 consensus_8775#0 CGACGACGCCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCG 583 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ------------------------------------------------------------ consensus_8775#0 GGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCT 643 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ------------------------------------------------------------ consensus_8775#0 CGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGA 703 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ------------------------------------------------------------ consensus_8775#0 GGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATC 763 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ------------------------------------------------------------ consensus_8775#0 TTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACAC 823 consensus_8775#2 ------------------------------------------------------------ consensus_8775#1 ------------------------------------------------------------ consensus_8775#0 ACTCTGCTGCTGCCGCT 840 consensus_8775#2 ----------------- consensus_8775#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||