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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 840 fasta sequence
[ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG-CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG-CCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGAGGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCTGCTGCCGCT]
[+] EMBL CB967236 [ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG CCGGCGAGCAGCGCGCAAATGACGAACAACCCCGTCGCCAGG ]
[+] EMBL CB967178 [ CGTACTCACAAGCTTTAG TTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACACTAGCATAAATCCACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCCACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAATCCTCCTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCGCGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAG CCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACG CCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGC ]
[-] EMBL CF335019 [ CTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACATCATGCTGGCGGGGTACCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGCCGACGACGCCCGGCGAGCAG GCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCGGGAAGTAGATCGGGAACAGCCGCACCGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCTCGTCGATGCTGTAGTTGATGGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGAGGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCTGCTGCCGCT]
consensusID : consensus_8775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[TTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCT]
[-] EMBL AK062513 [TTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACACACTCTGCT]
consensusID : consensus_8775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[TTTTTTAATCACAAGCTTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA]
[+] EMBL CF335020 [TTTTTTAATCACAAGCTTTAGATCAAACTTAATTAAAAGAATTAACCGCCGGAGACAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACAACACACTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGTACACCACAAACCAAACCGTCGCCCAAGATTGATACGGTTTTGCACAGAATCCTCCTCCTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTACGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGGTGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACGCCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8775#0 ATTCGTACTCACAAGCTTTAGATTCATTCAAACTTAATTAAAAGAATTAACCGCCGGAGA 60
consensus_8775#2 TTTTTTAATCACAAGCTTTAGAT-----CAAACTTAATTAAAAGAATTAACCGCCGGAGA 55
consensus_8775#1 ----------------TTTAGAT-----CAAACTTAATTAAAAGAATTAACCGCCGGAGA 39
******* ********************************
consensus_8775#0 CAATT-ACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACACAAACA 119
consensus_8775#2 CAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACA-ACACA 114
consensus_8775#1 CAATTTACAAATGAACAAATTCGCCACGACCACACGGATATACATCCACACACA-ACACA 98
***** ************************************************ * ***
consensus_8775#0 CTAGCATAAATC--CACAACGTTCCTCCTCACGCGCGTACACGTACGTACGC-------- 169
consensus_8775#2 CTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGT 174
consensus_8775#1 CTAGCATAAATCAACACAACGTTCCTCCTCACGCGCGTACACGTACGTACGCACGTACGT 158
************ **************************************
consensus_8775#0 ----CACAAACCAAACCGTCGCCCAAGATTGATAATACGGTTTTGCACCGAAA--TCCTC 223
consensus_8775#2 ACACCACAAACCAAACCGTCGCCCAAGATTGATA---CGGTTTTGCACAGAATCCTCCTC 231
consensus_8775#1 ACACCACAAACCAAACCGTCGCCCAAGATTGATA---CGGTTTTGCACAGAATCCTCCTC 215
****************************** *********** *** *****
consensus_8775#0 CTCGACACGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATAATGGCCG 283
consensus_8775#2 CTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTA 291
consensus_8775#1 CTCGACCCGGTCGACGACGCCCTCACACTCTGCTAACCATCGGATTCTGTATGATGGCTA 275
****** ********************************************* *****
consensus_8775#0 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 343
consensus_8775#2 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 351
consensus_8775#1 CGTGTGCTCCGGCGTGCAGCGACCCGGCGCACAGCAGCTGCGTCCCGGCCAAGATGATGG 335
************************************************************
consensus_8775#0 TGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACG 403
consensus_8775#2 TGAACGTCTCCAGCGCTCGCAGGCTCGGTGGCCTCCAGCCGATGCTGATCTCCTTGCACG 411
consensus_8775#1 TGAACGTCTCCAGGTGAGGGTGAGGAAGAGGAGGCCAGCGGACATGGAACT---GGGACC 392
************* * * * ** ***** ** ** ** * **
consensus_8775#0 CCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA 463
consensus_8775#2 CCAGCCCCATGGCGAGGAGGGTGAGGGTCCAGGTGACGATGGAGGCGGCGGCGGCGGACA 471
consensus_8775#1 CCCGGTCGCCATTGCTGATCTTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACA 452
** * * * ** * * ** ***** * * * ***
consensus_8775#0 TCATGCTGGCGGGGTAGCCCTGGCTGACGTCGTGGAGGCCGGTGAGCGAGGTGGAGACGC 523
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ACGGCGTCGCGAGAAAACACACTCTGCT-------------------------------- 480
consensus_8775#0 CGACGACGCCGGCGAGCAGCGCGAAGATGACGAAGAACCCCGTCGCCAGGTTGCCGATCG 583
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ------------------------------------------------------------
consensus_8775#0 GGAAGTAGATCGGGAACAGCCGCAACGGCGGCGACACCCCCTGCAGTGAGTTGAAGCTCT 643
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ------------------------------------------------------------
consensus_8775#0 CGTCGATGCTGTAGTTGAGCGCCCAGCCGGCGATGACGGCGACGACGACGTACAGGACGA 703
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ------------------------------------------------------------
consensus_8775#0 GGTTGAGGAAGAGGAGGCCAGCGGACATGGAACTGGGACCCCCGGTCGCCATTGCTGATC 763
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ------------------------------------------------------------
consensus_8775#0 TTCCCTCTTGCTCTGCTCTCCGAGGCAGGAGAAGATCACAACGGCGTCGCGAGAAAACAC 823
consensus_8775#2 ------------------------------------------------------------
consensus_8775#1 ------------------------------------------------------------
consensus_8775#0 ACTCTGCTGCTGCCGCT 840
consensus_8775#2 -----------------
consensus_8775#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||