These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACCAATTTTTTCACCGGTGTTCCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTTTGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGATCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTTGCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATAAATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA] [+] EMBL CB630143 [ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACCAATTTTTTCACCGGTGTTCCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTTTGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGATCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTTGCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATAAATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA] consensusID : consensus_8780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 524 fasta sequence [ATACAACAACAGCAGAAAC-GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACCAATTTTTTCACCCGGTGTTCCATTTTTCTATTCTCTCCACTTGTTG] [+] EMBL CA762923 [ATACAACAACAGCAGAAAC GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACCAATTTTTTCACCCGGTGTTCCATTTTTCTATTCTCTCCACTTGTTG] [-] EMBL C98908 [ TACAACAACAGCAGAAAC GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC CTTGGNGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCAAGCGAAGTANCCACGAACATCAGGACCATCCTGGATGGCTGGTGCAA ] [-] EMBL C98907 [ AGAANCGGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCNTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCAC ] consensusID : consensus_8780#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TTTTTGAGATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGGTATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATATCAATATAAGATACACTATTATGATGATGAATAGANACACTACANGNATCAATATAAGNTTNTACAACAGCAGANACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGNGTCATCGNCCTTTAAGAAGCGCGAGAACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAACAATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC] [-] EMBL AU089825 [TTTTTGAGATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGGTATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATATCAATATAAGATACACTATTATGATGATGAATAGANACACTACANGNATCAATATAAGNTTNTACAACAGCAGANACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGNGTCATCGNCCTTTAAGAAGCGCGAGAACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAACAATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8780#0 ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT 60 consensus_8780#1 ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT 60 consensus_8780#2 ------------------------------------------------------------ consensus_8780#0 AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG 120 consensus_8780#1 AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG 120 consensus_8780#2 ----------------------------------------------------TTTTTGAG 8 * * consensus_8780#0 CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC 180 consensus_8780#1 CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC 180 consensus_8780#2 ATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGG--- 65 ** * ** * ** * **** ** * * * * consensus_8780#0 TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC 240 consensus_8780#1 TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC 240 consensus_8780#2 TATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATAT 125 * * ** * * * * ** * * * * * *** ** * * consensus_8780#0 GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC 300 consensus_8780#1 GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC 300 consensus_8780#2 CAATATAAGATACACTATTA--TGATGATG-AATAGANACACTACANGNATCAATATAA- 181 ** ** ** ** ** ** * ** ** ** * * * * *** consensus_8780#0 CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT 360 consensus_8780#1 CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT 360 consensus_8780#2 --GNTTNTACAACAGCAGANACGATT--ACTGTGTAATGTTCCTTTACTTTCTTCAGGAT 237 * ** * ** * * ** ** * ***** ** consensus_8780#0 --CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATT 418 consensus_8780#1 --CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATT 418 consensus_8780#2 GGCCTAGTTCATGTCAGCTTTGT---TCTCAGNGTCATCGN-CCTTTAAGAAGCGCGAG- 292 ** * * **** * * ** *** * * ** * * ** * consensus_8780#0 AAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACC 478 consensus_8780#1 AAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACC 478 consensus_8780#2 AACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAAC 352 ** * * ** *** * **** *** * * * ** * * consensus_8780#0 AATTTTTTCACC-GGTGTT-CCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTT 536 consensus_8780#1 AATTTTTTCACCCGGTGTT-CCATTTTTCTATTC----TCTCCACTTGTTG--------- 524 consensus_8780#2 AATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC------ 406 **** *** ** * ** * * *** consensus_8780#0 TGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGA 596 consensus_8780#1 ------------------------------------------------------------ consensus_8780#2 ------------------------------------------------------------ consensus_8780#0 TCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTT 656 consensus_8780#1 ------------------------------------------------------------ consensus_8780#2 ------------------------------------------------------------ consensus_8780#0 GCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATA 716 consensus_8780#1 ------------------------------------------------------------ consensus_8780#2 ------------------------------------------------------------ consensus_8780#0 AATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA 759 consensus_8780#1 ------------------------------------------- consensus_8780#2 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||