These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 766 fasta sequence [CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGGCTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCACCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGATACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAGCTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGGTGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCGCTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT-CTCTGATTCTTGTTTCTGGTGG-CT-AATTAGAT-CATCTTTGTTGGGTGAAAG-AGGTAACAAAAAATTGTG-CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT] [+] EMBL AU070928 [CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGGCTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCACCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGATACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAGCTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGGTGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCGCTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGG ] [+] EMBL AU175044 [ CGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT CTCTGATTCTTGTTTCTGGTGG CT AATTAGAT CATCTTTGTTGGGTGAAAG AGGTAACAAAAAATTGTG CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAA ] [+] EMBL AU175043 [ TGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT CTCTGATTCTTGTTTCTGGTGG CT AATTAGAT CATCTTTGTTGGGTGAAAG AGGTAACAAAAAATTGTG CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT] [+] EMBL AU075530 [ cCCTGCTGNTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCCTCTGATTCTTGTTTCTGGTGGCCTCAATTAGATCCATCTTTGTTGGGTGAAAGNAGGTAACAAAAAATTGTGCCATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAA AAAAAAAAAAA ] consensusID : consensus_8783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGATTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATTGTGCATTTTTAGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU095589 [GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGATTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATTGTGCATTTTTAGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8783#0 CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGG 60 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 CTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCA 120 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 CCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGA 180 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 TACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAG 240 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 CTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGG 300 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 TGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCG 360 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 CTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTC 420 consensus_8783#1 ------------------------------------------------------------ consensus_8783#0 CGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTG 480 consensus_8783#1 ----GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTG 56 ************* *************** ************************** consensus_8783#0 CTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACG 540 consensus_8783#1 CTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACG 116 ************************************************************ consensus_8783#0 ATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGA 600 consensus_8783#1 ATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGA 176 ************************************************************ consensus_8783#0 TTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATT 660 consensus_8783#1 TTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATT 236 ************************************************************ consensus_8783#0 GTGCATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCA 720 consensus_8783#1 GTGCATTTTTAGGGGGG-TGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCA 295 ***************** ****************************************** consensus_8783#0 ATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT 766 consensus_8783#1 A----------------------AAAAAAAAAAAAAAAA------- 312 * **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||