cluster # 8783

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Oryza sativa
cluster # 8783 cluster # 8783 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8783#0 length = 766 sequences # 4

consensus_8783#1 length = 312 sequences # 1

consensusID : consensus_8783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 766
fasta sequence

                              [CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGGCTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCACCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGATACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAGCTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGGTGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCGCTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT-CTCTGATTCTTGTTTCTGGTGG-CT-AATTAGAT-CATCTTTGTTGGGTGAAAG-AGGTAACAAAAAATTGTG-CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT]

[+] EMBL AU070928             [CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGGCTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCACCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGATACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAGCTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGGTGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCGCTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGG                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU175044             [                                                                                                                                                                                                                                                                                                                                                                                                             CGGAGGTGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT CTCTGATTCTTGTTTCTGGTGG CT AATTAGAT CATCTTTGTTGGGTGAAAG AGGTAACAAAAAATTGTG CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAA        ]
[+] EMBL AU175043             [                                                                                                                                                                                                                                                                                                                                                                                                                   TGCTGGAGGTGGCGCTCCGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTT CTCTGATTCTTGTTTCTGGTGG CT AATTAGAT CATCTTTGTTGGGTGAAAG AGGTAACAAAAAATTGTG CATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT]
[+] EMBL AU075530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cCCTGCTGNTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCCTCTGATTCTTGTTTCTGGTGGCCTCAATTAGATCCATCTTTGTTGGGTGAAAGNAGGTAACAAAAAATTGTGCCATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAATTGGATTGTTTTTAA       AAAAAAAAAAA            ]




>consensus_8783#0
CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGG
CTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCA
CCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGA
TACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAG
CTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGG
TGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCG
CTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTC
CGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTG
CTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACG
ATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGA
TTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATT
GTGCATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCA
ATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT

consensusID : consensus_8783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGATTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATTGTGCATTTTTAGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAAAAAAAAAAAAAAAAAA]

[+] EMBL AU095589             [GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGATTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATTGTGCATTTTTAGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAAAAAAAAAAAAAAAAAA]




>consensus_8783#1
GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTGCTCC
ACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACGATTT
CCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGATTCT
TGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATTGTGC
ATTTTTAGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCAAAAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8783#0      CGCCAAGTCCGTCGCCGACAACCGNAAGGACTTCACCGACTCCGCCTCCTGCTTCGCCGG 60
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      CTCCTACGGCTACATGGCCCCAGGTAAAAACCAAACTTCCGTTGTGTCAATTGCTCGCCA 120
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      CCATGTCCATGTCGCGGACGCCATTGATGGGCATCTTGGATCTTGCGCGCAGAGTGCGGA 180
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      TACAGCTTGAAGACGACGGAGAAGAGCGACGTGTACAGCATGGGGATCGTGATGATGGAG 240
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      CTGGTGACCGGGCTGACGCCGACGGACAAGGCGTTCGGCGGCGACGTGGACATGGTGCGG 300
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      TGGGTGCAGTCGAGGGTGGAGGCGCCGTCGCCGGGGCGGGAGCAGGTGTTCGACCCGGCG 360
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      CTGAAGCCGCTGGCGCCGCGGGAGGAGTCGTCGATGACGGAGGTGCTGGAGGTGGCGCTC 420
consensus_8783#1      ------------------------------------------------------------
                                                                                  

consensus_8783#0      CGGTGCACGAGGACGGCGCCGGGGGAGAGGCCCNCGGCGAGGCAGGTGTCCGACCTGCTG 480
consensus_8783#1      ----GCACGAGGACGGCNCCGGGGGAGAGGCCCACGGCGAGGCAGGTGTCCGACCTGCTG 56
                          ************* *************** **************************

consensus_8783#0      CTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACG 540
consensus_8783#1      CTCCACGTCTCGCTCGATTACTATCGAGCCGGCGAGCACAAGCGCTAGGCTACGAGGACG 116
                      ************************************************************

consensus_8783#0      ATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGA 600
consensus_8783#1      ATTTCCAAACGCTGGAAACTTGTCCTCCTGAGCATTTTCTTTTCTTTTTTCTTTCTCTGA 176
                      ************************************************************

consensus_8783#0      TTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATT 660
consensus_8783#1      TTCTTGTTTCTGGTGGCTAATTAGATCATCTTTGTTGGGTGAAAGAGGTAACAAAAAATT 236
                      ************************************************************

consensus_8783#0      GTGCATTTTTAGGGGGGGTGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCA 720
consensus_8783#1      GTGCATTTTTAGGGGGG-TGTGTGGTTGAGAAAATCAAATCAAGCAAAGAATCCTCTTCA 295
                      ***************** ******************************************

consensus_8783#0      ATTGGATTGTTTTTAACTGTTCCAAAAAAAAAAAAAAAAAAAAACT 766
consensus_8783#1      A----------------------AAAAAAAAAAAAAAAA------- 312
                      *                      ****************