|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence
[TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA-TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT-GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAG-AAGCGCAT-CGAG-TACATCTCCGCTGAGCTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG-CA-GAACAGCACAGAAGGAATCGATCTTCAAGTTGCAACAG-AAGA-TG-CAGGCTGTACACAGCACAAGGCATAGGCCACACCTG-TT-TT-GCTGGTTATTTGCCCTCCACTTCTCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACAGATTATTAGTGAATTACCATTAGCTTGTGATGGCTTAAAAAAAAAA]
[+] EMBL AU108171 [TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAGAAAGCGCATCCGNG TACATCTCCGCTGAGCTGAAag ]
[+] EMBL CA753107 [ CACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCACCAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCGACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACA TCTCCAAGAACCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCCAACGTCAAG AAGCGCAT CGAG TACATCTCCGCTGAGCTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG CA GAACAGCA AGAAGGAATCGATCTTCAAGTTGCAACAG AAGA TG CAGGCTGTACA GGCA AAGGCATAGGCCACACCTG TN TT GCTGG ]
[+] EMBL BI801590 [ ACAGTCTCCAAGAATCACCAGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGT GAATGACGAGGCGAACGTGTACAAGCTGATC GGCCGGT CTGGTCAAGCAGGATCTCGCGGAGGCGAAGGCC ACGTCAAG AAGCGCAT CGAG TACATCTCTGCTGAGTTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAG CA GAACAGCACAGAAGGAATCGATCTTCAAGTTGC ACAG AAGA TG CAGGCTGTACACAGCACAAGGCATAGGCCACACCTG TT TT GCTGGTTATTTGCCCTCCACTTCTCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACAGATTATTAGTGAATTACCATTAGCTTGTGATGGCTTAAAAAAAAAA]
[+] EMBL BI800077 [ CCAGGTCCGCAAGCAGTACACCATCCAGGGCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGGAGCTGGTGGAATGACGAGGCGAACGTG ACAAGCGGAGCGGGCCGGTGCTGG CAAGCAGGATCTCGCGGA GCGAAGGCCAACGTCAAG AAGCGCAT CGAGTTACATCTCGTCTGATTTGAAGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAGCCAGGACCAGCCAAGAAGGAATCGATCTTCAAGTTGCAACAGTAAGATTGTCAGGCTGTACACAGCATAAGGCATAGGCCACACCTGATTCTTCGCTGGTTATTTGCCCTCCACTTCCCCGTTTGGAATTAGCGTTTCTGGTGGAAAAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCATGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATAC ]
consensusID : consensus_8785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[AGAGGNAATCGATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACAGGCAAAAGGCTNTAGGCCACACCTGTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAAAAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCATGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAATTATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTTGGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCATCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGCTAAAAAAACAAAAA]
[+] EMBL C98754 [AGAGGNAATCGATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACAGGCAAAAGGCTNTAGGCCACACCTGTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAAAAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCATGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAATTATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTTGGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCATCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGCTAAAAAAACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8785#0 TTCCGCACCACACCGGAATCCGGCGGCGGCGGCGGCGGAGGGGAGCAGAGGCAGCACCAC 60
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 CAATGGCGGCGGCGGCGGCGTCGTCGTCCACCCCGGCGGCCGTCCGCGAGATGCAGCGCG 120
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 ACCTCGAGTCCCAGGCCAACGCCCTCAGCAAGATCCAGAAAGACATCTCCAAGAACCACC 180
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 AGGTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACGAGCTCGTCCTCAAGGAGCTGG 240
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 AGCTGGTGAATGACGAGGCGAACGTGTACAAGCTGATCGGGCCGGTGCTGGTCAAGCAGG 300
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 ATCTCGCGGAGGCGAAGGCCAACGTCAAGAAGCGCATCGAGTACATCTCCGCTGAGCTGA 360
consensus_8785#1 ------------------------------------------------------------
consensus_8785#0 AGCGGATGGATCGAGCGCTCAAGGACTTGGAGGAAAAGCAGAACAGCACAGAAGGAATCG 420
consensus_8785#1 -------------------------------------------------AGAGGNAATCG 11
*** * *****
consensus_8785#0 ATCTTCAAGTTGCAACAGAAGATGCAGGCTGTACACAGCACAAGGC-ATAGGCCACACCT 479
consensus_8785#1 ATCTTCAAGTTGCAACAGAAGATGCAGGCTTTACA-GGCAAAAGGCTNTAGGCCACACCT 70
****************************** **** *** ***** ************
consensus_8785#0 GTTTTGCTGGTTA--TTTGCCCTCCACTTCTCC-GTTTGGAATTAGCGTTTCTGGTGGAA 536
consensus_8785#1 GTTTTGCTGGTTAATTTTGCCCTCCACTTCTCCCGTTTGGAATTAGCGTTTCTGGTAGAA 130
************* ****************** ********************** ***
consensus_8785#0 AAAGGAGGGGAGAAAAGAAGAAAAGAGAAATGTCTGTGCTCTGGAATTTCCAGGTTTTCA 596
consensus_8785#1 AAAAGAGGGGAGAACAGAAGGAAAGTGAAATGCATGTGCTCTGAAATTTCCAGGTTTTCA 190
*** ********** ***** **** ****** ********* ****************
consensus_8785#0 TGTTATTTGGAACTCTTTGGATGTAAAAGTTTGGCACTCGATACA-GATTATTAGTGAAT 655
consensus_8785#1 TGTTATTTGGAACTTTTTGGATGTAAAAGTTTGGCACTCCATACAAGATTATTAGTGAAT 250
************** ************************ ***** **************
consensus_8785#0 TACCATTAGCTTGTGATGGCTTAAAAAAAAAA---------------------------- 687
consensus_8785#1 T---ATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTT 307
* *********** ******
consensus_8785#0 ------------------------------------------------------------
consensus_8785#1 GGGGCGTCCCAGACTCCCAGTATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCA 367
consensus_8785#0 ------------------------------------------------------------
consensus_8785#1 TCTGAGCTTGTCTGAACTCTCAATTGAAGGGTTCTCGTAAAGAAACTATATCAAGTCTGC 427
consensus_8785#0 --------------
consensus_8785#1 TAAAAAAACAAAAA 441
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||