These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1742 fasta sequence [ACGCTGGTCGACTCCACCACGCAAGAGATGGCCGCCGCCGCCGCCGCAGCAGCAGACCACGATGCCGCGCCGCGCGCGCACGCGCTCATCCTCCCGTACCCGGCGCAGGGCCATGTCATCCCGCTCATGGAGCTCGCGTACTGCCTCATCGACCGTGGCTTCGCCGTCACCTTCGTCAACACCGAGCACAACCACCGCCGCGTCGTGGCCGCCGCCGCTGGCGCAGGCGGCGTGCAAGCACCGGGGAGCCGGGCACGGCGCCTGCGGCTCGTGGCGGTGGCGGACGGGATGGGCGACGGCGACGACCGGGACAACCTAGTCCGCCTCAACGCCGTCATGGAGGAGGCCATCCCGCCTCAGCTGGAGCCGATTCTTGATGGCGCCGGCGGCGAGGGGCAGCTGGGCAAGGTGACGTGCGTGGTGGTCGATGTCGGCATGTCGTGGGCGCTCGATGCCGTGAAGCGGAGGGGCCTCCCGGGCGCCGCGCTCTGGGCAGCGTCGGCGGCGGTGCTCGCCGTGCTACTCGGAGCGCAGAAGCTGATACGCGATGGCGTCATTGATGACGACGGTGCACCACTCAAATTAGAGAACAACTCATTCCGTCTCTCCGAGTTCACGCCACCCATGGACGCGACCTTCCTTGCATGGAACTTCATGGGCAACCGTGATGCAGAACGTATGGTGTTCCATTACCTTACCTCCTCCGCACGGGCTGCTGCGGCCAAAGCAGACATTCTCCTCTGCAACTCATTCGTGGAGTTGGAGCCAGCCATCTTTACTCTAAAATCCCCAGCCACCATCCTCCCTATTGGACCACTTCGTACCGGGCAGCGTTTTGCTCATCAGGTAGAAGTGGTTGGGCACTTTTGGCAAACCAATGATGACACATGCCTCTCTTTCCTTGATGAACAACCCTATGGTTCTGTTGTATATGTGGCATTTGGCAGTCTTACTATCATGAGCCCAGGACAACTAAAGGAACTTGCACTAGGGCTAGAGGCTTCTGGTCATCCATTTCTATGGGTAGTTAGGCCTGGACTTGCTGGTAACCTCCCTACCTCATTCTTGGACGCCACCATGGGACAAGGAAAGGGTATAGTGGTGGAGTGGGCTCCACAGGAACAGGTGCTAGCGCACCCTGCAGTTGGGTGCTTTGTAACGCATTGCGGGTGGAACTCAACGGTAGAGAGCATTCGTAATGGAGTGCCCATGCTATGTTGGCCATATTTCACCGATCAGTTCACAAATCAAATATACATTTGTGATATTTGGCGGATTGGGCTAAAGATGGTGCAAACCTGTGGTGAGGGGATCGTGACCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTACTACTAGATGAGGGTATCAAGGAAAGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAAACATGAGCGAAGAGGGTGAGTCCACCAGTAATTTGAACGCAGTTGTCGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTACGTTACTATTGATCCAATGAATAATGATATTTCATACTTCATTTTTATGGACCTGAAGTTTGCTTTGCAACCTATGATTGTTAAAACCATCTAATGTACGTGCTATATGCTCTAAAAGTAATATGTGTAAATGTGTATGGTACAAATGCATATATACTCCCTTTTTTATGTAGTTACCAACGTCATATATATTAAATTTTGGAAGTAGTATTTATTTCAAAAAAAAAAAAAAAA] [+] EMBL AK106038 [ACGCTGGTCGACTCCACCACGCAAGAGATGGCCGCCGCCGCCGCCGCAGCAGCAGACCACGATGCCGCGCCGCGCGCGCACGCGCTCATCCTCCCGTACCCGGCGCAGGGCCATGTCATCCCGCTCATGGAGCTCGCGTACTGCCTCATCGACCGTGGCTTCGCCGTCACCTTCGTCAACACCGAGCACAACCACCGCCGCGTCGTGGCCGCCGCCGCTGGCGCAGGCGGCGTGCAAGCACCGGGGAGCCGGGCACGGCGCCTGCGGCTCGTGGCGGTGGCGGACGGGATGGGCGACGGCGACGACCGGGACAACCTAGTCCGCCTCAACGCCGTCATGGAGGAGGCCATCCCGCCTCAGCTGGAGCCGATTCTTGATGGCGCCGGCGGCGAGGGGCAGCTGGGCAAGGTGACGTGCGTGGTGGTCGATGTCGGCATGTCGTGGGCGCTCGATGCCGTGAAGCGGAGGGGCCTCCCGGGCGCCGCGCTCTGGGCAGCGTCGGCGGCGGTGCTCGCCGTGCTACTCGGAGCGCAGAAGCTGATACGCGATGGCGTCATTGATGACGACGGTGCACCACTCAAATTAGAGAACAACTCATTCCGTCTCTCCGAGTTCACGCCACCCATGGACGCGACCTTCCTTGCATGGAACTTCATGGGCAACCGTGATGCAGAACGTATGGTGTTCCATTACCTTACCTCCTCCGCACGGGCTGCTGCGGCCAAAGCAGACATTCTCCTCTGCAACTCATTCGTGGAGTTGGAGCCAGCCATCTTTACTCTAAAATCCCCAGCCACCATCCTCCCTATTGGACCACTTCGTACCGGGCAGCGTTTTGCTCATCAGGTAGAAGTGGTTGGGCACTTTTGGCAAACCAATGATGACACATGCCTCTCTTTCCTTGATGAACAACCCTATGGTTCTGTTGTATATGTGGCATTTGGCAGTCTTACTATCATGAGCCCAGGACAACTAAAGGAACTTGCACTAGGGCTAGAGGCTTCTGGTCATCCATTTCTATGGGTAGTTAGGCCTGGACTTGCTGGTAACCTCCCTACCTCATTCTTGGACGCCACCATGGGACAAGGAAAGGGTATAGTGGTGGAGTGGGCTCCACAGGAACAGGTGCTAGCGCACCCTGCAGTTGGGTGCTTTGTAACGCATTGCGGGTGGAACTCAACGGTAGAGAGCATTCGTAATGGAGTGCCCATGCTATGTTGGCCATATTTCACCGATCAGTTCACAAATCAAATATACATTTGTGATATTTGGCGGATTGGGCTAAAGATGGTGCAAACCTGTGGTGAGGGGATCGTGACCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTACTACTAGATGAGGGTATCAAGGAAAGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAAACATGAGCGAAGAGGGTGAGTCCACCAGTAATTTGAACGCAGTTGTCGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTACGTTACTATTGATCCAATGAATAATGATATTTCATACTTCATTTTTATGGACCTGAAGTTTGCTTTGCAACCTATGATTGTTAAAACCATCTAATGTACGTGCTATATGCTCTAAAAGTAATATGTGTAAATGTGTATG ] [+] EMBL AU090460 [ GAGGGGCAGCTGGGCAAGGTGACGTGCGTGGTGGTCGATGTCGGCATGTCGTGGGCGCTCGATGCCGTGAAGCGGAGGGGCCTCCCGGGCGCCGCGCTCTGGGCAGCGTCGGCGGCGGTGCTCGCCGTGCTACTCGGAGCGCAGAAGCTGATACGCGATGGCGTCATTGATGACGACGGTGCACCACTCAAATTANAGAACAACTCATTCCGTCTCTCCGAGTTCACGCCACCCATGGACGCGACCTTCCTTGCATGGAACTTCATGGGCAACCGTGATGCAGAACGTATGGTGTTCCATTACCTTACCTNCTCCGCACGGGCTGCTGCGGCCAAAGCAGACATTCTCCTCTGCAA ] [-] EMBL CB678330 [ AGGCCTGGACTTGTTGGTAACCTCCCTACCTCATTCTTGGACGCCACCATGGGACAAGGAAAGGGTATAGTGGTGGAGTGGGTTCCACAGGAACAGGTGTTAGCGCACCCTGCAGTTGGGTGCTTTGTAACGCATTGCGGGTGGAACTCAACGGTAGGGAGCATTCGTAATGGAGTGCCCATGCTATGTTGGCCATATTTCACCGATCAGTTCACAAATCAAATATACATTTGTGATATTTGGCGGATGGGGTTAAAGATGGTGCAAACCTGTGGTGAGGGGATCGTGCCCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTATTCCTAGATGAGGGTATCAAGGAAAGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAACCATGAGCGAAGAGGGTGAGTCCACCAGTAATTTGAATGCAGTTGTCGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTTCTTTACTATTAATCCAATGAATAATAATCTTT ] [-] EMBL CA759291 [ caaggggGGGTGCTTTGTAACGCATTGCGGGTGGAACTCAACGGTAGAGAGCATTCGTAATGGAGTGCCCATGCTATGTTGGCCATATTTCACCGATCAGTTCCCAAATCAAATATACATTTGTGATATTTGGCGGATTGGGCTAAAGATGGTGCAAACCTGTGGTGAGGGGATCGTGACCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTACTACTAGATGAGGGTATCAAGGAAAGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAAACATGAGCGAAGAGGGTGAGTCCCCCAGAAATTTGAACGCAGTTGTCGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTACGTTACTATTGATCCAATGAATAATGATATTTCATACTTCATTTTTATGGACCTGAAGTTTGCTTTGCAACCTATGATTGTTAAAACCATTTAATGTACGTGCTATATGCTCTAAAAGTAATATGTGTAAATGTGTATGGTACAAATGCATATATACTCCCTTTTTTATGTAGTTACCAACGTCATATATATTAAATTTTGGAAGTAGTATTTATTTCAAAAAAAAAAAAAAAA] [+] EMBL AU090459 [ TGCCCATGCTATGTTGGCCATATTTCACCGATCAGTTCACAAATCAAATATACATTTGTGATATTTGGCGGATTGGGCTAAAGATGGTGCAAACCTGTGGTGAGGGGATCGTGACCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTACTACTAGATGAGGGTATCAAGGAAAGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAAACATGAGCGAAGAGGGTGAGTCCACCAGTAATTTGAACGCAGTTGTCGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTACGTTACTATTGATCCAATGAATAATGATATTTCATACTTCATTTTTATGGACCTGAAGTTTGCTTTGCAACCTATGATTGTTAAAACCATCTAATGTACGTGCTATATGCTCTAAAAGTAATATGTGTAAATGTGTATGGTACAAATGCAaaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||