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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 3016 fasta sequence
[CTGCCTCACCGCTGCCTCTGCCTCCTTCCAAATGCTTCGCCCCCCGAGCTCTCCTCGGCGTGCGCGGCGCAGCGCCATCCACCCCGACAACTCCTCCCAACCCCCAACCTATCCAAACACATTTTCTTGCCCGCCCCTGCAGCTCCCTCCACCGCGCCACCCATCCATCGCCAGCCATGCACACCCTCGCTCTGACGACCCTGTCACGTTGAGCTACGCTCGGAGGAGGACGCCACGACGGCGACCGGGAAGAAGATGAACCCGCTCCCTCCCCCGGCCAGCCGGCTGTGGGAGGCGAGCATCCGCAAGCTCAAGTACTCCACCATCCTCCGCGGCTCCGTCGTCCCCTCCGGCGCCGCCTTCGATGGTGCGGCGGCGGCGGCCACCGGAGGTGACCCCGTCACGCTCACCCCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGAAGACGGCGACGACGACATCGACTCCGTCCTCGACGACGTCGACACCGACGACGACGACGTCGACGAGGCGTCCCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGCGACCTGCGCGGCGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATGTACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGGCGCGGCAAGTTCTCGTGGTCGTCGGGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGCCAAGGAACCTACATCGGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGCACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGATGGGCACGGCCGGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGCGAGATGCACGGCCGCGGGACGGTGATATGGGCGGACGGCGACCGGTACGACGGCGCGTGGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACATCGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGTCCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGAGGTGATCACGAAGCTGCTCGAGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCGCAGAAGGTGCTGACATGGCCCGGGGTGGAGCCCGTGACGAAGAAGCCGGTGTGGCGGCCGCCGGAGGTCGCCGCTGACCAAGGGATGTGGCGGCCGCCGGAGGTCGGAGCTGACCAAGGGAGGAGGTCGAGCAGGAGGAACAGCATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGAGGAGACTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCCACGCTGCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGCCACAAGAACTACGAACTGATGCTCAACTTGCAGCTGGGTATCAGACATGCTGTAGGAAGGCAGTCAGCTCCTGCTTCATTGGATCTTAAATCATCAGCATTTGATCCGAAAGAGAAGGTGTGGACAAGATTTCCTCCTGAAGGATCAAAGCATACTCCTCCTCACCAGTCATGTGATTTCCGGTGGAAGGACTACTGTCCATTGGTTTTCAGGACTTTGCGCAAGCTCTTTGATGTTGACCCAGGAGACTACATGCTCTCCATTTGCGGGGATGATGCACTGCTGGAGCTTTCATCTCCCGGTAAAAGTGGAAGTTTCTTTTATTTCACCAATGATGACAAGTACATGATCAAAACAATGAAGAAAGCAGAAGTTAAAGTACTTCTGAGGATGCTTCCAGCCTATTATAAACATGTTCGATCTTTTGATAATACTCTAGTAACAAAATTTTTTGGCCTGCATTGTGTTAAAATTACAGGAGCTATTCAGAAAAAGGTTCGGTTTGTTATAATGGGGAATCTTTTCTGCTCCAACTATTCAATCCACAGACGCTTTGATTTGAAAGGATCATCACATGGTCGCACAACGGACAAACCCCTCGATCAAATTGATGAGACTACCACTTTGAAGGACCTTGATCTAAATTTCATTTTCCGGTTAGAGGGATCATGGTATGAAGATTTCTGCAGGCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAGCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAAAAGAAAAGCACCAGTCAAGCTAGGGATTGGCATGCCCTCAAGGGTGGAGAATGTTGTGAAGAATCCTGAAAGCGAATCCCAGCTCATTGGCGAACCAACAGGGGAATTCCAGGACGTTATCCTGTTCTTTGGAATCATTGATATCCTACAAGACTATGATATCAGCAAGAAGCTTGAGCATGCCTACAAATCCATGCAATATGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCATTCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTCTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGTTTTACTTATTTCCTCTTGTAGCAAAATAGTTGTTATATGAGCA]
[+] EMBL AK102875 [CTGCCTCACCGCTGCCTCTGCCTCCTTCCAAATGCTTCGCCCCCCGAGCTCTCCTCGGCGTGCGCGGCGCAGCGCCATCCACCCCGACAACTCCTCCCAACCCCCAACCTATCCAAACACATTTTCTTGCCCGCCCCTGCAGCTCCCTCCACCGCGCCACCCATCCATCGCCAGCCATGCACACCCTCGCTCTGACGACCCTGTCACGTTGAGCTACGCTCGGAGGAGGACGCCACGACGGCGACCGGGAAGAAGATGAACCCGCTCCCTCCCCCGGCCAGCCGGCTGTGGGAGGCGAGCATCCGCAAGCTCAAGTACTCCACCATCCTCCGCGGCTCCGTCGTCCCCTCCGGCGCCGCCTTCGATGGTGCGGCGGCGGCGGCCACCGGAGGTGACCCCGTCACGCTCACCCCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGAAGACGGCGACGACGACATCGACTCCGTCCTCGACGACGTCGACACCGACGACGACGACGTCGACGAGGCGTCCCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGCGACCTGCGCGGCGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATGTACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGGCGCGGCAAGTTCTCGTGGTCGTCGGGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGCCAAGGAACCTACATCGGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGCACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGATGGGCACGGCCGGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGCGAGATGCACGGCCGCGGGACGGTGATATGGGCGGACGGCGACCGGTACGACGGCGCGTGGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACATCGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGTCCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGAGGTGATCACGAAGCTGCTCGAGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCGCAGAAGGTGCTGACATGGCCCGGGGTGGAGCCCGTGACGAAGAAGCCGGTGTGGCGGCCGCCGGAGGTCGCCGCTGACCAAGGGATGTGGCGGCCGCCGGAGGTCGGAGCTGACCAAGGGAGGAGGTCGAGCAGGAGGAACAGCATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGAGGAGACTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCCACGCTGCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGCCACAAGAACTACGAACTGATGCTCAACTTGCAGCTGGGTATCAGACATGCTGTAGGAAGGCAGTCAGCTCCTGCTTCATTGGATCTTAAATCATCAGCATTTGATCCGAAAGAGAAGGTGTGGACAAGATTTCCTCCTGAAGGATCAAAGCATACTCCTCCTCACCAGTCATGTGATTTCCGGTGGAAGGACTACTGTCCATTGGTTTTCAGGACTTTGCGCAAGCTCTTTGATGTTGACCCAGGAGACTACATGCTCTCCATTTGCGGGGATGATGCACTGCTGGAGCTTTCATCTCCCGGTAAAAGTGGAAGTTTCTTTTATTTCACCAATGATGACAAGTACATGATCAAAACAATGAAGAAAGCAGAAGTTAAAGTACTTCTGAGGATGCTTCCAGCCTATTATAAACATGTTCGATCTTTTGATAATACTCTAGTAACAAAATTTTTTGGCCTGCATTGTGTTAAAATTACAGGAGCTATTCAGAAAAAGGTTCGGTTTGTTATAATGGGGAATCTTTTCTGCTCCAACTATTCAATCCACAGACGCTTTGATTTGAAAGGATCATCACATGGTCGCACAACGGACAAACCCCTCGATCAAATTGATGAGACTACCACTTTGAAGGACCTTGATCTAAATTTCATTTTCCGGTTAGAGGGATCATGGTATGAAGATTTCTGCAGGCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAGCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAAAAGAAAAGCACCAGTCAAGCTAGGGATTGGCATGCCCTCAAGGGTGGAGAATGTTGTGAAGAATCCTGAAAGCGAATCCCAGCTCATTGGCGAACCAACAGGGGAATTCCAGGACGTTATCCTGTTCTTTGGAATCATTGATATCCTACAAGACTATGATATCAGCAAGAAGCTTGAGCATGCCTACAAATCCATGCAATATGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCATTCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTCTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGTTTTACTTATTTCCTCTTGTAGCAAAATAGTTGTTATATGAGCA]
[+] EMBL AK100364 [ ACCCATCCATCGCCAGCCATGCACACCCTCGCTCTGACGACCCTGTCACGTTGAGCTACGCTCGGAGGAGGACGCCACGACGGCGACCGGGAAGAAGATGAACCCGCTCCCTCCCCCGGCCAGCCGGCTGTGGGAGGCGAGCATCCGCAAGCTCAAGTACTCCACCATCCTCCGCGGCTCCGTCGTCCCCTCCGGCGCCGCCTTCGATGGTGCGGCGGCGGCGGCCACCGGAGGTGACCCCGTCACGCTCACCCCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGAAGACGGCGACGACGACATCGACTCCGTCCTCGACGACGTCGACACCGACGACGACGACGTCGACGAGGCGTCCCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGCGACCTGCGCGGCGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATGTACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGGCGCGGCAAGTTCTCGTGGTCGTCGGGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGCCAAGGAACCTACATCGGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGCACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGATGGGCACGGCCGGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGCGAGATGCACGGCCGCGGGACGGTGATATGGGCGGACGGCGACCGGTACGACGGCGCGTGGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACATCGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGTCCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGAGGTGATCACGAAGCTGCTCGAGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCGCAGAAGGTGCTGACATGGCCCGGGGTGGAGCCCGTGACGAAGAAGCCGGTGTGGCGGCCGCCGGAGGTCGCCGCTGACCAAGGGATGTGGCGGCCGCCGGAGGTCGGAGCTGACCAAGGGAGGAGGTCGAGCAGGAGGAACAGCATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGAGGAGACTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCCACGCTGCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGCCACAAGAACTACGAACTGATGCTCAACTTGCAGCTGGGTATCAGACATGCTGTAGGAAGGCAGTCAGCTCCTGCTTCATTGGATCTTAAATCATCAGCATTTGATCCGAAAGAGAAGGTGTGGACAAGATTTCCTCCTGAAGGATCAAAGCATACTCCTCCTCACCAGTCATGTGATTTCCGGTGGAAGGACTACTGTCCATTGGTTTTCAGGACTTTGCGCAAGCTCTTTGATGTTGACCCAGGAGACTACATGCTCTCCATTTGCGGGGATGATGCACTGCTGGAGTTTTCATCTCCCGGTAAAAGTGGAAGTTTCTTTTATTTCACCAATGATGACAAGTACATGATCAAAACAATGAAGAAAGCAGAAGTTAAAGTACTTCTGAGGATGCTTCCAGCCTATTATAAACATGTTCGATCTTTTGATAATACTCTAGTAACAAAATTTTTTGGCCTGCATTGTGTTAAAATTACAGGAGCTATTCAGAAAAAGGTTCGGTTTGTTATAATGGGGAATCTTTTCTGCTCCAACTATTCAATCCACAGACGCTTTGATTTGAAAGGATCATCACATGGTCGCACAACGGACAAACCCCTCGATCAAATTGATGAGACTACCACTTTGAAGGACCTTGATCT AATTTCATTTTCCGGTTAGAGGGATCATGGTATGAAGATTTCTGCAGGCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAGCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTT ]
[+] EMBL CA766006 [ AAGAAAAGCACCAGTCAAGCTAGGGATTAGCATGCCCTCAAGGGAGGAGAATGTCGTGAAGAATCCTGAAAGCGAATCCCAGCTCATTGGCGAACCAACAGGGGAATTCCAGGACGTTATCCTGTTCTTTGGAATCATTGATATCCTACAAGACTATGATATCAGCAAGAAGCTTGAGCGTGCCTACAAATCCATGCAATGTGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATG TTTTTTTGGCCATTCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTCTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGGTTTACTT ]
consensusID : consensus_8792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1616 fasta sequence
[CCCCTGCTACCTCCACTGCGCCACCCATCACCAGCCATGCACAGCCTCGCTCTGCCTCCGCCTCCGGCGTCGTTCTCGTTCTGACCCTGTCACGTTGAGTTAGGCTCCTCGGAGGACGCCACGACGGCGACCGGGAAGAAGATGAACCCGCTCCCTGCTCTGGCCAGCCGGCTGTGGGAGGCGAGCATCCGCAAGCTCAAGTACTCCACCATCCTTCGCGGCTCCGTCGTTCCCTCCGGCGGCACCTTCGACGGACCGGCGGCCGCCACCGGCAATGCCGCTGGAGGTGACCCCATCACGCTCACCCCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGACGACGGCGACGAAGACATCGACTCCGTCCTCGACGACGTTGACACCGACGACGACGACGTCGACGAGGCGTCGCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGCGACCTACGCTGTGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATGTACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGCCGCGGCAAGTTCTCGTGGTCGTCGGGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGACAGGGGACGTACATCGGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGCACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGACGGGCACGGCCAGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGCGAGATGCACGGCCGCGGGACGGTGATATGGGCGGACGGCGACCGGTACGACGGCGCGTGGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACATTGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGTCCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGGGGTGATCACGAAGCTGCTCGAGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCACAGAAGGTGCTGACATGGCCTGGGGTGGAGCCCGTGACGAAGAAGCCGGTATGGCTGCCGCCGGAGGTCGCCGCTGACCAAGGGATGTGGCGGCCGCCGGAGGTTGGAGCTGACCAAGGGAGGAGGTCGAGCAGGAGGAACAACATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGAGGAGAGTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCGACGATGCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGGCACAAGAACTACGAACTGATGCTCAACTTGCAGCTGGGAATAATATTAGATGTACCTATCATGTATGAATTAATAATATGGATAAAATTAGATGTACCTATCATTTATTTGTATTTGGTTTTTACTGTACATTACCAGCGTGTTTTTTTTTTCCAAATCACACTCAAATTCCTAGCCTTTGATAGACATAA]
[+] EMBL AK105591 [CCCCTGCTACCTCCACTGCGCCACCCATCACCAGCCATGCACAGCCTCGCTCTGCCTCCGCCTCCGGCGTCGTTCTCGTTCTGACCCTGTCACGTTGAGTTAGGCTCCTCGGAGGACGCCACGACGGCGACCGGGAAGAAGATGAACCCGCTCCCTGCTCTGGCCAGCCGGCTGTGGGAGGCGAGCATCCGCAAGCTCAAGTACTCCACCATCCTTCGCGGCTCCGTCGTTCCCTCCGGCGGCACCTTCGACGGACCGGCGGCCGCCACCGGCAATGCCGCTGGAGGTGACCCCATCACGCTCACCCCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGACGACGGCGACGAAGACATCGACTCCGTCCTCGACGACGTTGACACCGACGACGACGACGTCGACGAGGCGTCGCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGCGACCTACGCTGTGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATGTACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGCCGCGGCAAGTTCTCGTGGTCGTCGGGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGACAGGGGACGTACATCGGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGCACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGACGGGCACGGCCAGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGCGAGATGCACGGCCGCGGGACGGTGATATGGGCGGACGGCGACCGGTACGACGGCGCGTGGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACATTGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGTCCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGGGGTGATCACGAAGCTGCTCGAGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCACAGAAGGTGCTGACATGGCCTGGGGTGGAGCCCGTGACGAAGAAGCCGGTATGGCTGCCGCCGGAGGTCGCCGCTGACCAAGGGATGTGGCGGCCGCCGGAGGTTGGAGCTGACCAAGGGAGGAGGTCGAGCAGGAGGAACAACATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGAGGAGAGTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCGACGATGCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGGCACAAGAACTACGAACTGATGCTCAACTTGCAGCTGGGAATAATATTAGATGTACCTATCATGTATGAATTAATAATATGGATAAAATTAGATGTACCTATCATTTATTTGTATTTGGTTTTTACTGTACATTACCAGCGTGTTTTTTTTTTCCAAATCACACTCAAATTCCTAGCCTTTGATAGACATAA]
consensusID : consensus_8792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CTAGGTGGGCCAAGATTGCCACTGGGTGCACGGTGGAACGGAATGGGCTGTGGGGCGCGGAGTTCGGTCTTGGCTTAGTCGACTTGGGCAACAACGCGACCGGCTATGCGACGGGTTCGATGGCCTAACTATTGCAGGCCGGGCTAAGGGGGGTTTCGGGGCGTTATACTTTTCTTTGTAATCATGGAGTTCCTGCAAGGCTTTGATTTCAGCAAGAAGTGTGAGCATGACTGCAAATCCATGCAATAGGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCATTCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTTTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGTTTTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762222 [CTAGGTGGGCCAAGATTGCCACTGGGTGCACGGTGGAACGGAATGGGCTGTGGGGCGCGGAGTTCGGTCTTGGCTTAGTCGACTTGGGCAACAACGCGACCGGCTATGCGACGGGTTCGATGGCCTAACTATTGCAGGCCGGGCTAAGGGGGGTTTCGGGGCGTTATACTTTTCTTTGTAATCATGGAGTTCCTGCAAGGCTTTGATTTCAGCAAGAAGTGTGAGCATGACTGCAAATCCATGCAATAGGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACACTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCATTCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAATTAGTCTGACGGTTTTTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTTTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAGGATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGTTTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8792#0 CTGCCTCACCGCTGCCTCTGCCTCCTTCCAAATGCTTCGCCCCCCGAGCTCTCCTCGGCG 60
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TGCGCGGCGCAGCGCCATCCACCCCGACAACTCCTCCCAACCCCCAACCTATCCAAACAC 120
consensus_8792#1 --------------------------------------------------CCCCTGCTAC 10
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 ATTTTCTTGCCCGCCCCTGCAGCTCCCTCCACCGCGCCACCCATCCATCGCCAGCCATGC 180
consensus_8792#1 CTCCACTGCGCCACCCATCACCAGCCATGCACAGCCTCGCTCTGCCTCCGCCTCCGGCGT 70
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 ACACCCTCGCTCTGACGACCCTGTCACGTTGAGCTACGCTCGGAGGAGGACGCCACGACG 240
consensus_8792#1 -CGTTCTCGTTCTGAC---CCTGTCACGTTGAGTTAGGCTCCTCGGAGGACGCCACGACG 126
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GCGACCGGGAAGAAGATGAACCCGCTCCCTCCCCCGGCCAGCCGGCTGTGGGAGGCGAGC 300
consensus_8792#1 GCGACCGGGAAGAAGATGAACCCGCTCCCTGCTCTGGCCAGCCGGCTGTGGGAGGCGAGC 186
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 ATCCGCAAGCTCAAGTACTCCACCATCCTCCGCGGCTCCGTCGTCCCCTCCGGCGCCGCC 360
consensus_8792#1 ATCCGCAAGCTCAAGTACTCCACCATCCTTCGCGGCTCCGTCGTTCCCTCCGGCGGCACC 246
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TTCGATGGTGCGGCGGCGGCG---------GCCACCGGAGGTGACCCCGTCACGCTCACC 411
consensus_8792#1 TTCGACGGACCGGCGGCCGCCACCGGCAATGCCGCTGGAGGTGACCCCATCACGCTCACC 306
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGAAGACGGCGAC 471
consensus_8792#1 CCAAGCCTCTCCGTCAGCTCCTCCACCTCCAACACCATCTACCAGTACGACGACGGCGAC 366
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GACGACATCGACTCCGTCCTCGACGACGTCGACACCGACGACGACGACGTCGACGAGGCG 531
consensus_8792#1 GAAGACATCGACTCCGTCCTCGACGACGTTGACACCGACGACGACGACGTCGACGAGGCG 426
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TCCCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGC 591
consensus_8792#1 TCGCTCGGCGAGCCCAGCCACTCCGACCAGCTGCTGCCCAGCGGAGACTTCTACCAGGGC 486
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GACCTGCGCGGCGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATG 651
consensus_8792#1 GACCTACGCTGTGACCTCCCCCACGGCGCCGGCAAGTATCTCTGGACGGACGGCAGCATG 546
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGGCGCGGCAAGTTCTCGTGGTCGTCG 711
consensus_8792#1 TACGAGGGGTCGTGGCGCGGCGGCCGCGCGGCCGGCCGCGGCAAGTTCTCGTGGTCGTCG 606
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGCCAAGGAACCTACATC 771
consensus_8792#1 GGCGCCATCTACGAGGGCGACCTCGCCGGCGGGTACATGCACGGACAGGGGACGTACATC 666
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGC 831
consensus_8792#1 GGCGAGCTCGGGGACACGTTCGCCGGGCTGTGGGCGAACAACCTCCGGCACGGCCGCGGC 726
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 ACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGAT 891
consensus_8792#1 ACGCAGGCGTACGTCAACGGCGACGTGTACGACGGCCACTGGCGCGACGGGCTGCAGGAC 786
consensus_8792#2 -----------------------------------------------------------C 1
consensus_8792#0 GGGCACGGCCGGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGC 951
consensus_8792#1 GGGCACGGCCAGTACATCTGGCGCGGCGGCCACGAGTACATCGGGACGTGGAAGGCCGGC 846
consensus_8792#2 TAGGTGGGCCAAGAT---TGCCACTGGGTGCACG-GTGGAACGGAATG-GGCTGTGGGGC 56
* **** * ** * * * * **** ** * *** * * ** * ***
consensus_8792#0 GAGATGCACGGCCGCGGGACGGT-GATATGGGCGG-ACGGCGACCGGTACGACGGCGCGT 1009
consensus_8792#1 GAGATGCACGGCCGCGGGACGGT-GATATGGGCGG-ACGGCGACCGGTACGACGGCGCGT 904
consensus_8792#2 GCGGAGTTCGGTCTTGGCTTAGTCGACTTGGGCAACAACGCGACCGGCTATGCGACGGGT 116
* * * *** * ** ** ** ***** * ******** ** ** **
consensus_8792#0 GGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACA 1069
consensus_8792#1 GGGAGGACGCCAAGCCCAAGGGGCAGGGCACGTTCCGGTGGTCCGACGGCGGGATGTACA 964
consensus_8792#2 TCGATGGC-CTAACTATTGCAGGCCGGGC---TAAGGGGGGTTT--CGGGGCGTTATACT 170
** * * * ** *** **** * ** *** *** * * * ***
consensus_8792#0 TCGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGT 1129
consensus_8792#1 TTGGCCTGTGGTGCCAGGAGTCCGGCGAGACGCAGGGCAAGGGCGTGTACTACCCGCCGT 1024
consensus_8792#2 TTTCTTTGTAATCATGGAGTTCCTGCAAGGC-TTTGATTTCAGCAAGAAGTGTGAGC--- 226
* *** * * *** ** ** * * ** * * * **
consensus_8792#0 CCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGAGGTGATCACGAAGCTGCTCG 1189
consensus_8792#1 CCGGTGGCCCGGCGGTGCCGTTGCCCCGGGAACCCAAGGGGGTGATCACGAAGCTGCTCG 1084
consensus_8792#2 ---ATGACT--GCAAATCCAT-GCAATAGGATCCCAA---------CTCCATATCGGCTG 271
** * ** ** * ** *** ***** * * * * *
consensus_8792#0 AGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCGCAGAAGGTGCTGA 1249
consensus_8792#1 AGGAGCTGGAGATGTCCGAGGGGAAGACGGTGTCGCTGCTGCCGTCACAGAAGGTGCTGA 1144
consensus_8792#2 TTGATCCAAAGCAATACT----GCAAAAGGTTCAGGGACTTCATTTACAGGGCTTTTAGT 327
** * ** * * * * * *** * ** * * *** * *
consensus_8792#0 CATGGCCCGGGGTGGAGCCCGTGACGAAGAAGCCGGTGTGGCGGCCGCCGGAGGTCGCCG 1309
consensus_8792#1 CATGGCCTGGGGTGGAGCCCGTGACGAAGAAGCCGGTATGGCTGCCGCCGGAGGTCGCCG 1204
consensus_8792#2 GAAGACGTACAGTA-AATACGTCATTAACAA------AAGGGAACACTCTTAACTCTTAA 380
* * * ** * *** * ** ** ** * * * **
consensus_8792#0 CTGACCAAGGGATGTGG--CGGCCGCCGGAGGTCGGAGCTGACCAAGGGAGGAGGTCGAG 1367
consensus_8792#1 CTGACCAAGGGATGTGG--CGGCCGCCGGAGGTTGGAGCTGACCAAGGGAGGAGGTCGAG 1262
consensus_8792#2 CTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCATTCCAGGA--CTATT 438
** * ** * ** * * **** *** ** ** *** ****
consensus_8792#0 CAGGAGGAACAGCATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGA 1427
consensus_8792#1 CAGGAGGAACAACATGTCGTCCGACATTGACAGCCTGGTTGAGGGGGAGGACGGCGGCGA 1322
consensus_8792#2 TTGTAGGTA----AGATCATT---CATTCATTATGTTGTAGATGGCAATAC--GTAATTA 489
* *** * * ** * **** * * ** ** ** * * *
consensus_8792#0 GGAGACTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCCACGCT 1487
consensus_8792#1 GGAGAGTCGCAACGACAGGTCATGGGTGCGGACACCGTCGTGTATGCGCGCGCCGACGAT 1382
consensus_8792#2 GTCTGACGGTTTTTGCCCCTGGTGGGTGTATAGATT-TTGTACATTT---CCCAAATCTT 545
* * * * ****** * * * ** ** * * * *
consensus_8792#0 GCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGCCACAAGAACTACGAACT 1547
consensus_8792#1 GCCGAAGCCGGGGAAGAAGCAGGGGGAGACCATCTCCAAGGGGCACAAGAACTACGAACT 1442
consensus_8792#2 TTCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAA 605
* * ** ** * ** * * * *** * ***
consensus_8792#0 GATGCTCAACTTGCAGCTGGGTATCAGACATGCTGTAGGAAGGCAGTCAGCTCCTGCTTC 1607
consensus_8792#1 GATGCTCAACTTGCAGCTGGGAATAATATTAGATGTAC-----CTATCATGTATGAATTA 1497
consensus_8792#2 GGATGTAGGACAGAAATTGTTGACCATGTAACAGTT-------CTTTCATTTTTGTTTTA 658
* * * * ** * * * * *** * **
consensus_8792#0 ATTGGATC--TTAAATCATCAGCATTTGATCCGAAAGAGAAGGTGTGGACAAGATTTCCT 1665
consensus_8792#1 ATAATATGGATAAAATTAGATGTACCTATCATTTA--------TTTGTATTTGGTTTT-T 1548
consensus_8792#2 AAAAAAAAAAAAAAAA-------------------------------------------- 674
* * ***
consensus_8792#0 CCTGAAGGATCAAAGCATACTCCTCCTCACCAGTCATGTGATTTCCGGTGGAAGGACTAC 1725
consensus_8792#1 ACTGTACATTACCAGCGTGTTTTTTTTTTCCAA----ATCACACTCA-------AATTCC 1597
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TGTCCATTGGTTTTCAGGACTTTGCGCAAGCTCTTTGATGTTGACCCAGGAGACTACATG 1785
consensus_8792#1 TAGCCTTTGATAGACATAA----------------------------------------- 1616
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CTCTCCATTTGCGGGGATGATGCACTGCTGGAGCTTTCATCTCCCGGTAAAAGTGGAAGT 1845
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TTCTTTTATTTCACCAATGATGACAAGTACATGATCAAAACAATGAAGAAAGCAGAAGTT 1905
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 AAAGTACTTCTGAGGATGCTTCCAGCCTATTATAAACATGTTCGATCTTTTGATAATACT 1965
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CTAGTAACAAAATTTTTTGGCCTGCATTGTGTTAAAATTACAGGAGCTATTCAGAAAAAG 2025
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GTTCGGTTTGTTATAATGGGGAATCTTTTCTGCTCCAACTATTCAATCCACAGACGCTTT 2085
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GATTTGAAAGGATCATCACATGGTCGCACAACGGACAAACCCCTCGATCAAATTGATGAG 2145
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 ACTACCACTTTGAAGGACCTTGATCTAAATTTCATTTTCCGGTTAGAGGGATCATGGTAT 2205
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GAAGATTTCTGCAGGCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATG 2265
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAGCAGCAGTCCT 2325
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAAAAGAAAAGCACCAGTCAAG 2385
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CTAGGGATTGGCATGCCCTCAAGGGTGGAGAATGTTGTGAAGAATCCTGAAAGCGAATCC 2445
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CAGCTCATTGGCGAACCAACAGGGGAATTCCAGGACGTTATCCTGTTCTTTGGAATCATT 2505
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GATATCCTACAAGACTATGATATCAGCAAGAAGCTTGAGCATGCCTACAAATCCATGCAA 2565
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TATGATCCCAACTCCATATCGGCTGTTGATCCAAAGCAATACTGCAAAAGGTTCAGGGAC 2625
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TTCATTTACAGGGCTTTTAGTGAAGACGTACAGTAAATACGTCATTAACAAAAGGGAACA 2685
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CTCTTAACTCTTAACTCAAGAAAGCATAACGACCAGCCGATGGATGTTTTTTTTGGCCAT 2745
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TCCAGGACTATTTTGTAGGTAAGATCATTCATTCATTATGTTGTAGATGGCAATACGTAA 2805
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TTAGTCTGACGGTTTCTGCCCCTGGTGGGTGTATAGATTTTGTACATTTCCCAAATCTTT 2865
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 TCATGTGTAATTACTAATTAGAAGTAGTGTACTTGTACTCATGTCAATTGACATGAAAAG 2925
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 GATGTAGGACAGAAATTGTTGACCATGTAACAGTTCTTTCATTTTTGTTTTACTTATTTC 2985
consensus_8792#1 ------------------------------------------------------------
consensus_8792#2 ------------------------------------------------------------
consensus_8792#0 CTCTTGTAGCAAAATAGTTGTTATATGAGCA 3016
consensus_8792#1 -------------------------------
consensus_8792#2 -------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||