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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1047 fasta sequence
[TCCTCGTCTCGCCGGCGCAGGCGGCGCCTGCATCTATCCATCCATCCACCCACCCACGCCACCCTCCCGTTCCGATTCGGCGCACGCGGCTGCTAGACACCGCGTTCCTGACCCGCCGCGAATGTCGGGGACGCCTCTTCCCCCACCGGCGCTCCCGCCCCCGCCGGGCACGGACATGACCGGGATCTGCTTCCGCGACCAGCTCTGGCTCAACACCTACCCGCTCGACCGCAACCTCGTCTTCGACTACTTCGCGCTCTCCCCCTTCTACGACCTCACCTGCAACAACGAGTCCCTCCGCTCGCGCCAAATCCACCCCCTCGACATGTCCCACCTCACGAAGATGACGGGGATGGAGTACGTGCTCAGCGACGTGATGGAGCCGCACCTGTTCGTGATCCGGAAGCAGAGGCGGGAGAGCCCCGTGAAGTCCAACGCCATGCTCGCCTACTACATCCTCGATGGCTCCATCTACCAGGCGCCCCAGCTCTGCAGCGTCTTCGCGTCCCGCATCAGTAGGGCTATGCATCACATCTCAAAAGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGT-GGAAACAGAGCCTGACACAGCAGC-TTCTGAATCAAAGACGCAGAAGGAAGCAATTGATTTGAA-GGAGTTGAA-GCGGGTCGACCATATCCTAATGTCGTTGCAAAGGAAGCTGCAACCTGCTCCTCCCCCTCCACCTTTTCCAGAGGGCTATGTACCATCAGAACAAGAGAAAGCATCAGATGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTGCAAAAAGGCCTAGATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTAATGGTTATTTTGAAGGATAAATTCAAGGGAGCATAAATCTGATTAAAAGGTACTGGCTGTTTGTCAGGCCTGTTT]
[+] EMBL AK102305 [TCCTCGTCTCGCCGGCGCAGGCGGCGCCTGCATCTATCCATCCATCCACCCACCCACGCCACCCTCCCGTTCCGATTCGGCGCACGCGGCTGCTAGACACCGCGTTCCTGACCCGCCGCGAATGTCGGGGACGCCTCTTCCCCCACCGGCGCTCCCGCCCCCGCCGGGCACGGACATGACCGGGATCTGCTTCCGCGACCAGCTCTGGCTCAACACCTACCCGCTCGACCGCAACCTCGTCTTCGACTACTTCGCGCTCTCCCCCTTCTACGACCTCACCTGCAACAACGAGTCCCTCCGCTCGCGCCAAATCCACCCCCTCGACATGTCCCACCTCACGAAGATGACGGGGATGGAGTACGTGCTCAGCGACGTGATGGAGCCGCACCTGTTCGTGATCCGGAAGCAGAGGCGGGAGAGCCCCGTGAAGTCCAACGCCATGCTCGCCTACTACATCCTCGATGGCTCCATCTACCAGGCGCCCCAGCTCTGCAGCGTCTTCGCGTCCCGCATCAGTAGGGCTATGCATCACATCTGAAAAGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGT GGAAACAGAGCCTGACACAGCAGC TTCTGAATCAAAGACGCAGAAGGAAGCAATTGATTTGAA GGAGTTGAA GCGGGTCGACCATATCCTAATGTCGTTGCAAAGGAAGCTGCAACCTGCTCCTCCCCCTCCACCTTTTCCAGAGGGCTATGTACCATCAGAACAAGAGAAAGCATCAGATGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTGCAAAAAGGCCTAGATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTAATGGTTATTTTGAAGGATAAATTCAAGGGAGCATAAATCTGATTAGGTGGTACTGGCTGTTTGTCAGGCCTGTTT]
[+] EMBL C27853 [ GTCTTCGACTACTTCGCGCTCTCCCCCTTCTACGACCTCACCTGCAACAACGAGTCCCTCCGCCCGCGCCAAATCCACCCCCTCGACATGTCCCACCTCACGAAGATGACGGGGATGGAGTACGTGCTCAGCGACGTGATGGAGCCGCACCTGTTCGTGATCCGGAAGCAGAGGCGGGAGAGCCCCGAGAAGTCCAACGCCATGCTCGCCTACTACATCCTCGATGGCTCCATCTACCAGGCGCCCCAGCTCTGCAGCGTCTTCGCGTCCCGCATCAGTAGGGCTATGCATCACATCTCAAAAGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGTGGGAAACAGAGCCTGACACAGCAGCTTTTTGAATCAAAGACGCAGAAGGAAGCAATTTATTTGAAGGGAGTTGAAGGCGGGTCGACCATAT ]
[-] EMBL CF306404 [ CATCAGTAGGGCTATGCATCACATCTCAAAAGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGT GGAAACAGAGCCTGACACAGCAGC TTCTGAATCAAAGACGCAGAAGGAAGCAATTGATTTGAA GGAGTTGAA GCGGGTCGACCATATCCTAATGTCGTTGCAAAGGAAGCTGCAACCTGCTCCTCCCCCTCCACCTTTTCCAGAGGGCTATGTACCATCAGAACAAGAGAAAGCATCAGATGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTGCAAAAAGGCCTAGATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTAATGGTTATTTTGAAGGATAAATTCAAGGGAGCATAAATCTGATTAAAA ]
[-] EMBL CF306403 [ CCTTTTCCAGAGGGGTATGCTCCATCAGAACAAGAGAAAGCATCAGATGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTGCAAAAAGGCCTAGATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTAAAAAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTAATGGTTATTTTGAAGGATAAATTCAAGGGAGCATAAATCTGATTAAAA ]
consensusID : consensus_8795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[TGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATATTGATAAGGCCCTGCAAAAAGGCCTAGATTCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTACAAAAAAAAAAAAAAA]
[+] EMBL CF332900 [TGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATATTGATAAGGCCCTGCAAAAAGGCCTAGATTCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTACAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8795#0 TCCTCGTCTCGCCGGCGCAGGCGGCGCCTGCATCTATCCATCCATCCACCCACCCACGCC 60
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 ACCCTCCCGTTCCGATTCGGCGCACGCGGCTGCTAGACACCGCGTTCCTGACCCGCCGCG 120
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 AATGTCGGGGACGCCTCTTCCCCCACCGGCGCTCCCGCCCCCGCCGGGCACGGACATGAC 180
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CGGGATCTGCTTCCGCGACCAGCTCTGGCTCAACACCTACCCGCTCGACCGCAACCTCGT 240
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CTTCGACTACTTCGCGCTCTCCCCCTTCTACGACCTCACCTGCAACAACGAGTCCCTCCG 300
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CTCGCGCCAAATCCACCCCCTCGACATGTCCCACCTCACGAAGATGACGGGGATGGAGTA 360
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CGTGCTCAGCGACGTGATGGAGCCGCACCTGTTCGTGATCCGGAAGCAGAGGCGGGAGAG 420
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CCCCGTGAAGTCCAACGCCATGCTCGCCTACTACATCCTCGATGGCTCCATCTACCAGGC 480
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 GCCCCAGCTCTGCAGCGTCTTCGCGTCCCGCATCAGTAGGGCTATGCATCACATCTCAAA 540
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 AGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGTGGAAACAGAGCCTGA 600
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 CACAGCAGCTTCTGAATCAAAGACGCAGAAGGAAGCAATTGATTTGAAGGAGTTGAAGCG 660
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 GGTCGACCATATCCTAATGTCGTTGCAAAGGAAGCTGCAACCTGCTCCTCCCCCTCCACC 720
consensus_8795#1 ------------------------------------------------------------
consensus_8795#0 TTTTCCAGAGGGCTATGTACCATCAGAACAAGAGAAAGCATCAGATGATCTGTTGGCCTC 780
consensus_8795#1 ---------------------------------------------TGATCTGTTGGCCTC 15
***************
consensus_8795#0 AGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTGCAAAAAGGCCTAG 840
consensus_8795#1 AGAGGCACTGCCTCCCCAGGTTGATCCTAT-ATTGAT-AAGGCCCTGCAAAAAGGCCTAG 73
****************************** ****** **********************
consensus_8795#0 ATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTG 900
consensus_8795#1 ATTC-AATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTG 132
**** *******************************************************
consensus_8795#0 TTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTG 960
consensus_8795#1 TTGTAAGTTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTG 192
************************************************************
consensus_8795#0 GTTTCAGTCGTAATGGTTATTTTGAAGGATAAATTCAAGGGAGCATAAATCTGATTAAAA 1020
consensus_8795#1 GTTTCAGTCGTA-----CAAAAAAAAAAAAAAA--------------------------- 220
************ * ** * ***
consensus_8795#0 GGTACTGGCTGTTTGTCAGGCCTGTTT 1047
consensus_8795#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||