cluster # 8797

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Oryza sativa
cluster # 8797 cluster # 8797 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8797#0 length = 694 sequences # 1
consensus_8797#1 length = 462 sequences # 1

consensus_8797#2 length = 455 sequences # 2
consensus_8797#3 length = 217 sequences # 1

consensusID : consensus_8797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CTGGACTGAAGGAGTAGAAAGTTCTCCTCCCCACATCGCCGGCACCGCGAACCACCGCGGCCACCGGATCGCGGCGCGGCGCGGCCGCCGACGAGCGAGGGCTCTCGACCGACCAGAACAGGGTTTCAATCTTTGGATGCATGCGTGCTTTAGTCCATCATTGATGTCCCCAAGGTGCAAGGGATGATATCTGAAGAAAATANTGAGGGGATGTTTCTAGAAGGTACTGTTGCTTTACTTACGCTCCAACCTAAACTTGTGAATAACAGGGCTTGAACTGAGTTATTTTATACTCCCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCTTATATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGACTTGTATTATGAAACGGAGGAAGTACTGTATATGTACATAAACTGCAAAAATGAGCTATAGCACAATGAAACCACANTCTTGGATGTGTTTCCAGGATGGTGGTTTGGTGGTGATGTGCTAATTCTTAAGGATTGTTCCAGTGGTGGGTGTCTGGATTTCCTACCCAAGTTGCTGACAACCAAGATGAGGATATGGTGATATGCTGATTGTCATCACCGATAGAGACAGGTTGTGCTTCTGTTTCTGCGGACTTTAAATTTTGGCATTTTCCTTTTAAATGCCCGTCCATCATTATCCCGAATAAATTCCTGCATTTGG]

[+] EMBL CF332731             [CTGGACTGAAGGAGTAGAAAGTTCTCCTCCCCACATCGCCGGCACCGCGAACCACCGCGGCCACCGGATCGCGGCGCGGCGCGGCCGCCGACGAGCGAGGGCTCTCGACCGACCAGAACAGGGTTTCAATCTTTGGATGCATGCGTGCTTTAGTCCATCATTGATGTCCCCAAGGTGCAAGGGATGATATCTGAAGAAAATANTGAGGGGATGTTTCTAGAAGGTACTGTTGCTTTACTTACGCTCCAACCTAAACTTGTGAATAACAGGGCTTGAACTGAGTTATTTTATACTCCCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCTTATATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGACTTGTATTATGAAACGGAGGAAGTACTGTATATGTACATAAACTGCAAAAATGAGCTATAGCACAATGAAACCACANTCTTGGATGTGTTTCCAGGATGGTGGTTTGGTGGTGATGTGCTAATTCTTAAGGATTGTTCCAGTGGTGGGTGTCTGGATTTCCTACCCAAGTTGCTGACAACCAAGATGAGGATATGGTGATATGCTGATTGTCATCACCGATAGAGACAGGTTGTGCTTCTGTTTCTGCGGACTTTAAATTTTGGCATTTTCCTTTTAAATGCCCGTCCATCATTATCCCGAATAAATTCCTGCATTTGG]




>consensus_8797#0
CTGGACTGAAGGAGTAGAAAGTTCTCCTCCCCACATCGCCGGCACCGCGAACCACCGCGG
CCACCGGATCGCGGCGCGGCGCGGCCGCCGACGAGCGAGGGCTCTCGACCGACCAGAACA
GGGTTTCAATCTTTGGATGCATGCGTGCTTTAGTCCATCATTGATGTCCCCAAGGTGCAA
GGGATGATATCTGAAGAAAATANTGAGGGGATGTTTCTAGAAGGTACTGTTGCTTTACTT
ACGCTCCAACCTAAACTTGTGAATAACAGGGCTTGAACTGAGTTATTTTATACTCCCTCC
GTTTCATAATGTAAGACTTTCTAGCATTGCTTATATTCATTAACATCTATATGAATGTGG
GCAATGCTAGAAAGACTTGTATTATGAAACGGAGGAAGTACTGTATATGTACATAAACTG
CAAAAATGAGCTATAGCACAATGAAACCACANTCTTGGATGTGTTTCCAGGATGGTGGTT
TGGTGGTGATGTGCTAATTCTTAAGGATTGTTCCAGTGGTGGGTGTCTGGATTTCCTACC
CAAGTTGCTGACAACCAAGATGAGGATATGGTGATATGCTGATTGTCATCACCGATAGAG
ACAGGTTGTGCTTCTGTTTCTGCGGACTTTAAATTTTGGCATTTTCCTTTTAAATGCCCG
TCCATCATTATCCCGAATAAATTCCTGCATTTGG

consensusID : consensus_8797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGGGCAAAAACTACATTTTTCTTTACAGGTAGCATGTTGGCCATATTCTTTTGATTGTATTGGGGCCATTACAGAAGTTATTGCATATCCAATGTGACACATGCTCAAGATGACAATAGTAAATACCACCGCCGTACAGATCTTGGCTTTCTAACATTTTCAAAACATTTAAGTCACTGGGGCATTGCATTGAAAGCAATCAGGTGTCTTCAAAACCTTATGCTGTCTCTATCGGGGATGACAATCAGCATATCACCATATCCTCATCTTGGTTGTCAGCAACTTCTAGAAACATCCCCTCATATTTTCTTCAAATATCACCCCTTGGCTCGTCCTCTGG]

[+] EMBL CA761751             [TTTTTTTTTTTTTTTTTTTAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGGGCAAAAACTACATTTTTCTTTACAGGTAGCATGTTGGCCATATTCTTTTGATTGTATTGGGGCCATTACAGAAGTTATTGCATATCCAATGTGACACATGCTCAAGATGACAATAGTAAATACCACCGCCGTACAGATCTTGGCTTTCTAACATTTTCAAAACATTTAAGTCACTGGGGCATTGCATTGAAAGCAATCAGGTGTCTTCAAAACCTTATGCTGTCTCTATCGGGGATGACAATCAGCATATCACCATATCCTCATCTTGGTTGTCAGCAACTTCTAGAAACATCCCCTCATATTTTCTTCAAATATCACCCCTTGGCTCGTCCTCTGG]




>consensus_8797#1
TTTTTTTTTTTTTTTTTTTAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTT
CTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGG
CCTGGGCAAAAACTACATTTTTCTTTACAGGTAGCATGTTGGCCATATTCTTTTGATTGT
ATTGGGGCCATTACAGAAGTTATTGCATATCCAATGTGACACATGCTCAAGATGACAATA
GTAAATACCACCGCCGTACAGATCTTGGCTTTCTAACATTTTCAAAACATTTAAGTCACT
GGGGCATTGCATTGAAAGCAATCAGGTGTCTTCAAAACCTTATGCTGTCTCTATCGGGGA
TGACAATCAGCATATCACCATATCCTCATCTTGGTTGTCAGCAACTTCTAGAAACATCCC
CTCATATTTTCTTCAAATATCACCCCTTGGCTCGTCCTCTGG

consensusID : consensus_8797#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 455
fasta sequence

                              [TTTTTTGTTCCAATGGTGAATGCATCTGCTGGGACTTATATGGCAATTCTGCCTGGTGAGAGTATATGTGTGTAATGCTCCTCTCACCATTGCCCCCACTACCAGCTGGGCTTGGTGCTCCTAAAATCTGGTTAAGTGTGACCACCATTGCCCCTATCATTTGATCATATAGCTGGCATTTTGTGCCAATGGGCACAAGGGGTCTCACATCCTATCCCTTCGATATCAGTCAAGGCTACATAATTTTGAACAATGATATGTGAAGAAATTATACAGTGACCGCTGAATAACTGAAGTAACAAACCATCAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGTGCAAAAACTACATTTTTCTTTACAGGTAGCATGTTGGTCAT]

[+] EMBL CF332732             [TTTTTTGTTCCAATGGTGAATGCATCTGCTGGGACTTATATGGCAATTCTGCCTGGTGAGAGTATATGTGTGTAATGCTCCTCTCACCATTGCCCCCACTACCAGCTGGGCTTGGTGCTCCTAAAATCTGGTTAAGTGTGACCACCATTGCCCCTATCATTTGATCATATAGCTGGCATTTTGTGCCAATGGGCACAAGGGGTCTCACATCCTATCCCTTCGATATCAGTCAAGGCTACATAATTTTGAACAATGATATGTGAAGAAATTATACAGTGACCGCTGAATAACTGAAGTAACAAACCATCAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGTGCAAAAACTACATTTTTCTTTACAGGTAGCATGTTGGTCAT]
[+] EMBL CF335152             [TTTTTTGTTCCAATGGTGAATGCATCTGCTGGGACTTATATGGCAATTCTGCCTGGTGAGAGTATATGTGTGTAATGCTCCTCTCACCATTGCCCCCACTACCAGCTGGGCTTGGTGCTCCTAAAATCTGGTTAAGTGTGACCACCATTGCCCCTATCATTTGATCATATAGCTGGCATTTTGTGCCAATGGGCACAAGGGGTCTCACATCCTATCCCTTCGATATCAGTCAAGGCTACATAATTTTGAACAATGATATGTGAAGAAATTATACAGTGACCGCTGAATAACTGAAGTAACAAACCATCAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGTGCA                                      ]




>consensus_8797#2
TTTTTTGTTCCAATGGTGAATGCATCTGCTGGGACTTATATGGCAATTCTGCCTGGTGAG
AGTATATGTGTGTAATGCTCCTCTCACCATTGCCCCCACTACCAGCTGGGCTTGGTGCTC
CTAAAATCTGGTTAAGTGTGACCACCATTGCCCCTATCATTTGATCATATAGCTGGCATT
TTGTGCCAATGGGCACAAGGGGTCTCACATCCTATCCCTTCGATATCAGTCAAGGCTACA
TAATTTTGAACAATGATATGTGAAGAAATTATACAGTGACCGCTGAATAACTGAAGTAAC
AAACCATCAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTT
TGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGTGCAAAA
ACTACATTTTTCTTTACAGGTAGCATGTTGGTCAT

consensusID : consensus_8797#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [GTGCAAGGTGATGATATCTGAAGAAAATATGAGGGGATGTTTCTAGAAGATGCAAAAAATGATAAGGTCATCCCTTGGACGGTCTCACGGCACAGCATCAAACCTTCCATCTTGGCAGGTCAGTGGTTCAACAGTTGTTGTTTTGTCCATCAACTGTTGCCATCTTGCATCCATCATCNTCCATCACTTGCCAGCTGCACGCAGCATTTCAACAGGC]

[+] EMBL CB965626             [GTGCAAGGTGATGATATCTGAAGAAAATATGAGGGGATGTTTCTAGAAGATGCAAAAAATGATAAGGTCATCCCTTGGACGGTCTCACGGCACAGCATCAAACCTTCCATCTTGGCAGGTCAGTGGTTCAACAGTTGTTGTTTTGTCCATCAACTGTTGCCATCTTGCATCCATCATCNTCCATCACTTGCCAGCTGCACGCAGCATTTCAACAGGC]




>consensus_8797#3
GTGCAAGGTGATGATATCTGAAGAAAATATGAGGGGATGTTTCTAGAAGATGCAAAAAAT
GATAAGGTCATCCCTTGGACGGTCTCACGGCACAGCATCAAACCTTCCATCTTGGCAGGT
CAGTGGTTCAACAGTTGTTGTTTTGTCCATCAACTGTTGCCATCTTGCATCCATCATCNT
CCATCACTTGCCAGCTGCACGCAGCATTTCAACAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8797#1      ------------------------------------------------------------
consensus_8797#2      ------------------------------------------------------------
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      CTGGACTGAAGGAGTAGAAAGTTCTCCTCCCCACATCGCCGGCACCGCGAACCACCGCGG 60
                                                                                  

consensus_8797#1      ----------------------------------------TTTTTTTTTTTTTTTTTTTA 20
consensus_8797#2      -----------------------------------------TTTTTTGTTCCAATGGTGA 19
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      CCACCGGATCGCGGCGCGGCGCGGCCGCCGACGAGCGAGGGCTCTCGACCGACCAGAACA 120
                                                                                  

consensus_8797#1      ACCCA---------AGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTT 71
consensus_8797#2      ATGCATCTGCTGGGACTTATATGGCAATTCTGCCTGGTGAGAGTATATGTGTGTAATGCT 79
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      GGGTTTCAATCTTTGGATGCATGCGTGCTTTAGTCCATCATTGATGTCCCCAAGGTGCAA 180
                                                                                  

consensus_8797#1      TGTACCACCAAAGGCCTGTGCAAAAACTACACTTTTGTACCACCAAAGGCCTGGGCAAAA 131
consensus_8797#2      CCTCTCACCATTGCCCCCACTACCAGCTGGGCTTG-GTGCT-CCTAAAATCTGGTTAAGT 137
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      GGGATGATATCTGAAGAAAATANTGAGGGGATGTTTCTAGAAGGTACTGTTGCTTTACTT 240
                                                                                  

consensus_8797#1      ACTACATTTTTCTTTACAGGTAGCATGTTGGCCATATTCTTTTGATTGTATTGGGGCCAT 191
consensus_8797#2      GTGAC---CACCATTGCCCCTATCAT-TTGATCATATAGCTGGCATTTTGTGCCAATGGG 193
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      ACGCTCCAACCTAAACTTGTGAATAACAGGGCTTGAACTGAGTTATTTTATACTCCCTCC 300
                                                                                  

consensus_8797#1      TACAGAAGTTATTGCATATCCAATGTGACACAT-GCTCAAGATGACAATAGTAAATACCA 250
consensus_8797#2      CACAAGGGGTCTCACATCCTATCCCTTCGATATCAGTCAAGGCTACA-TAATTTTGAACA 252
consensus_8797#3      ----------------------------------GTGCAAGGTGA---TGATATCTGAAG 23
consensus_8797#0      GTTTCATAATGTAAGACTTTCTAGCATTGCTTATATTCATTAACATCTATATGAATGTGG 360
                                                           **     *      *        

consensus_8797#1      CCGCCG-TACAGATCTTGGCTTTCTAACATTTTCAAAACATT---TAAGTCACTGGGGCA 306
consensus_8797#2      ATGATA-TGTGAAGA--AATTATACAGTGACCGCTGAATAAC---TGAAGTAACAAACCA 306
consensus_8797#3      AAAATA-TGAGGGGAT-GTTTCTAGAAGATGCAAAAAATGAT---AAGGTCATC----CC 74
consensus_8797#0      GCAATGCTAGAAAGACTTGTATTATGAAACGGAGGAAGTACTGTATATGTACATAAACTG 420
                             *              *             *                       

consensus_8797#1      TTGCATTGAAA-GCAATCAGGTGTCTTCAAAACCTTATGCTGTCTCTATCGG---GGATG 362
consensus_8797#2      TCAACCCAAGTTACAGTACCACTCTTCCCTTTCTCTGGAATTTCTCAAAATGTTTGTACC 366
consensus_8797#3      TTGGACGGTCTCACGGCACAGCATC----AAACCTT---CCATCTTGGCAGGTCAGTGGT 127
consensus_8797#0      CAAAAATGAGCTATAGCACAATGAAACCACANTCTTG-GATGTGTTTCCAGGATGGTGGT 479
                                                         *      * *      *   *    

consensus_8797#1      ACAATCAGCATATCACCATATCCTCATCTTGGT--TGTCAGCAACTTCTAGAAACATCCC 420
consensus_8797#2      ACCAAAGGCCTGT-GCAAAAACTACACTTTTGTACCACCAAAGGCCTGTGCAAAAACTAC 425
consensus_8797#3      TCAACAG--TTGTTGTTTTGTCCATCAACTGTTGCCATC--TTGCATCCATCATCNTC-C 182
consensus_8797#0      TTGGTGGTGATGTGCTAATTCTTAAGGATTGTTCCAGTGGTGGGTGTCTGGATTTCCTAC 539
                                * *                *  *             *            *

consensus_8797#1      CTCATATTTTCTTCAA----ATATCA-CCCCTTGGCTCGTCCTCTGG------------- 462
consensus_8797#2      AT----TTTTCTTTAC----AGGTAG-CATGTTGG-TCAT-------------------- 455
consensus_8797#3      ATCACTTGCCAGCTGC----ACGCAG-CATTTCAACAGGC-------------------- 217
consensus_8797#0      CCAAGTTGCTGACAACCAAGATGAGGATATGGTGATATGCTGATTGTCATCACCGATAGA 599
                            *             *                                       

consensus_8797#1      ------------------------------------------------------------
consensus_8797#2      ------------------------------------------------------------
consensus_8797#3      ------------------------------------------------------------
consensus_8797#0      GACAGGTTGTGCTTCTGTTTCTGCGGACTTTAAATTTTGGCATTTTCCTTTTAAATGCCC 659
                                                                                  

consensus_8797#1      -----------------------------------
consensus_8797#2      -----------------------------------
consensus_8797#3      -----------------------------------
consensus_8797#0      GTCCATCATTATCCCGAATAAATTCCTGCATTTGG 694