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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 969 fasta sequence
[CGAGTAGTTCGATTAACTTTTTTTTTGGTGCTTTGTTTTGCTCTTGCAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTTCGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTCGTTTCTTGGGATCATCATGCTGTTTGACAAGGGGTTCCTTGCAATAGGAAACATTCTGTTTGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCCTAAGAATCACAAGGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTTGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCCACCTTCGGTTGGATATTCCACCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCGGTGTGATCGTCGCTTTGCTGCTGGAGCTGGATCACTCCAAGGGATG-CCGGGTCACCTCCAAAGAAACTTAGAGCGATACATGCGGTTTTTTCTGGTT-AGCTTGTGATTCGTTGGTGCTGCTGGTATGTGAATCTTGTGTCTCTGCTACCAGTACCCTGCCTCAAAGACCTCGTTACTACGCTCGCCAGTTGCCCAGTTGTTCGTAGAAACTAGAAAGACTTTCTTGCTTGTTAATGGGTAGAGAGGGTAGTCATCGTACATATGGCTATGCTCATTGCACGATTGGTTGATTGCTAGTAATTGATTTGTAGGTCATCCTACGGGAATATTACTGAGTAGCAAAAGCTTTCAGTTCCGGTGCTAAAAATGACGTTCATGTTTTTACCTTATGACGTTCATATTTTTACTGTTCATGTTTTTACCAAATGACTTTTAGTAGAATCATATCTTTACCAAAAAA]
[+] EMBL BF475227 [CGAGTAGTTCGATTAACTTTTTTTTTGGTGCTTTGTTTTGCTCTTGCAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTTCGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTCGTTTCTTGGGATCATCATGCTGTTTGACAAGGGGTTCCTTGCAATAGGAAACATTCTGTTTGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCCTAAGAATCACAAGGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTTGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCCACCTTCGGTTGGATATTCCACCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCGGTGTGATCGTCGCTTTGCTGCTGGGGCTGGATCACTCCAAGGGATGCCCGGGTCACCTTCAAAGAAACTTANAGCGATACATGCGGGTTTTTCTGGTTAAGCTTGNGATTCGTNGGTGCTGCTGGTATGTGAATCTTGngctt ]
[-] EMBL CF319988 [ TTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTTGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCCACCTTCGGTTGGATATTCCACCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCGGTGTGATCGTCGCTTTGCTGCTGGAGCTGGATCACTCCAAGGGATG CCGGGTCACCTCCAAAGAAACTTAGAGCGATACATGCGGTTTTTTCTGGTT AGCTTGTGATTCGTTGGTGCTGCTGGTATGTGAATCTTGTGTCTCTGCTACCAGTACCCTGCCTCAAAGACCTCGTTACTACGCTCGCCAGTTGCCCAGTTGTTCGTAGAAACTAGAAAGACTTTCTTGCTTGTTAATGGGTAGAGAGGGTAGTCATCGTACATATGGCTATGCTCATTGCACGATTGGTTGATTGCTAGTAATTGATTTGTAGGTCATCCTACGGGAATATTACTGAGTAGCAAAAGCTTTCAGTTCCGGTGCTAAAAA ]
[-] EMBL CF315096 [ CGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCGGTGTGATCGTCGCTTTGCTGCTGGAGCTGGATCACTCCAAGGGATG CCGGGTCACCTCCAAAGAAACTTAGAGCGATACATGCGGTTTTTTCTGGTT AGCTTGTGATTCGTTGGTGCTGCTGGTATGTGAATCTTGTGTCTCTGCTACCAGTACCCTGCCTCAAAGACCTCGTTACTACGCTCGCCAGTTGCCCAGTTGTTCGTAGAAACTAGAAAGACTTTCTTGCTTGTTAATGGGTAGAGAGGGTAGTCATCGTACATATGGCTATGCTCATTGCACGATTGGTTGATTGCTAGTAATTGATTTGTAGGTCATCCTACGGGAATATTACTGAGTAGCAAAAGCTTTCAGTTCCGGTGCTACGTATGACGTTCATGTTTTTACCTTATGACGTTCATATTTTTACTGTTCATGTTTTTACCAAATGACTTTTAGTAGAATCATATCTTTACCAAAAAA]
consensusID : consensus_8800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence
[CCCCCATTCGAAAATCAAAATCTCTTCCTCGCCTCTCTCTCTGCTCTCTGCTCTCCTCGCCTTCCTCTCTCGCCAGTTGCTCCGCGTCCTCGCTCGAGTGCGCGGCGATCCATCCGGGAGGGAGAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTTCGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTCGTTTCTTGGGATCATCATGCTGTTTGACAAGGGGCTCCTTGCAATAGGAAACATTCTGTTTGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCCTAAGAATCACAAGGGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTGGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCNCACCTTCGGTTGGATATTCCACCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCCGGTGTGATCGTCGCTTTGCTGCT]
[+] EMBL CF315095 [CCCCCATTCGAAAATCAAAATCTCTTCCTCGCCTCTCTCTCTGCTCTCTGCTCTCCTCGCCTTCCTCTCTCGCCAGTTGCTCCGCGTCCTCGCTCGAGTGCGCGGCGATCCATCCGGGAGGGAGAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTTCGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTCGTTTCTTGGGATCATCATGCTGTTTGACAAGGGGCTCCTTGCAATAGGAAACATTCTGTTTGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCCTAAGAATCACAAGGGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTGGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCNCACCTTCGGTTGGATATTCCACCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCCGGTGTGATCGTCGCTTTGCTGCT]
[+] EMBL CF319987 [CCCCCATTCGAAAATCAAAATCTCTTCCTCGCCTCTCTCTCTGCTCTCTGCTCTCCTCGCCTTCCTCTCTCGCCAGTTGCTCCGCGTCCTCGCTCGAGTGCGCGGCGATCCATCCGGGAGGGAGAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTTCGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTCGTTTCTTGGGATCATCATGCTGTTTGACAAGGGGTTCCTTGCAATAGGAAACATTCTGTTTGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCCTAAGAATCACAA GGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTTGGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCC CACCTTCGGTTGGATATTCCACCACCCTCTTGTGACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8800#0 ------------------------------------------------------------
consensus_8800#1 CCCCCATTCGAAAATCAAAATCTCTTCCTCGCCTCTCTCTCTGCTCTCTGCTCTCCTCGC 60
consensus_8800#0 ------------CGAGTAGTTCGATTAACTTTTTTTTTGGTGCTTTGTTTTGCTCTTGC- 47
consensus_8800#1 CTTCCTCTCTCGCCAGTTGCTCCGCGTCCTCGCTCGAGTGCGCGGCGATCCATCCGGGAG 120
* *** * ** ** * * ** * * * *
consensus_8800#0 ----AGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTT 103
consensus_8800#1 GGAGAGACGGTGACGGCGCGGGTTGAAGTTGAACTCAGCGGCGGGTGGGATGGTTTCCTT 180
********************************************************
consensus_8800#0 CGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTC 163
consensus_8800#1 CGAGATGAGTGAACTCAAGAAGATTGGGCTGGGCTTATCTGGGTTCGGAGTTCTGTTCTC 240
************************************************************
consensus_8800#0 GTTTCTTGGGATCATCATGCTGTTTGACAAGGGGTTCCTTGCAATAGGAAACATTCTGTT 223
consensus_8800#1 GTTTCTTGGGATCATCATGCTGTTTGACAAGGGGCTCCTTGCAATAGGAAACATTCTGTT 300
********************************** *************************
consensus_8800#0 TGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCC 283
consensus_8800#1 TGTGTCTGGTGTTTCACTGACCATTGGACCGAAGTCAACCGTGCAGTTCTTCACCAAGCC 360
************************************************************
consensus_8800#0 TAAGAATCACAAGGG-CTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTT 342
consensus_8800#1 TAAGAATCACAAGGGGCTCGATTGCTTTTGGAATTGGCTTCTTCCTGGTCCTTATTGGTG 420
*************** *******************************************
consensus_8800#0 GGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCT 402
consensus_8800#1 GGCCGTTCTTTGGCATGCTGGCAGAGGCATACGGCTTCGTCAAGCTCTTCAGAGGCTTCT 480
************************************************************
consensus_8800#0 GGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCC-ACCTTCGGTTGGATATTCCACCAC 461
consensus_8800#1 GGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCNCACCTTCGGTTGGATATTCCACCAC 540
********************************** ************************
consensus_8800#0 CCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCC-GGTGTGATCGTC 520
consensus_8800#1 CCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCCGGTGTGATCGTC 600
*********************************************** ************
consensus_8800#0 GCTTTGCTGCTGGAGCTGGATCACTCCAAGGGATGCCGGGTCACCTCCAAAGAAACTTAG 580
consensus_8800#1 GCTTTGCTGCT------------------------------------------------- 611
***********
consensus_8800#0 AGCGATACATGCGGTTTTTTCTGGTTAGCTTGTGATTCGTTGGTGCTGCTGGTATGTGAA 640
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 TCTTGTGTCTCTGCTACCAGTACCCTGCCTCAAAGACCTCGTTACTACGCTCGCCAGTTG 700
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 CCCAGTTGTTCGTAGAAACTAGAAAGACTTTCTTGCTTGTTAATGGGTAGAGAGGGTAGT 760
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 CATCGTACATATGGCTATGCTCATTGCACGATTGGTTGATTGCTAGTAATTGATTTGTAG 820
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 GTCATCCTACGGGAATATTACTGAGTAGCAAAAGCTTTCAGTTCCGGTGCTAAAAATGAC 880
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 GTTCATGTTTTTACCTTATGACGTTCATATTTTTACTGTTCATGTTTTTACCAAATGACT 940
consensus_8800#1 ------------------------------------------------------------
consensus_8800#0 TTTAGTAGAATCATATCTTTACCAAAAAA 969
consensus_8800#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||