cluster # 8803

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Oryza sativa
cluster # 8803 cluster # 8803 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8803#0 length = 688 sequences # 1

consensus_8803#1 length = 572 sequences # 2
consensus_8803#2 length = 239 sequences # 2

consensusID : consensus_8803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [TTTTTTTTTTTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTTCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACTCTAAACAATGACGGCTACTGATTAAGTATGATTAAGGACGTCCTAAGGTTTCCCTAGGGTGCATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTAGATGAGATGTGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCATAAGCTTTCCAACAAGTACTCATAGACCCCCGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGTCAGGAGGCTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTTGATCATGTATGCATTCGTTATGCTCGCCCTCTTTTCCTTCGTCCAAGCAAGTACCTCTGCAAACGAACACACACAAAACTCATTGTGTTGCCGCCACTCCGACCCTGCCCCCTGCTATTGACGGTTGTTATGTACCAGTTTCGACCACCAACTAGGGATCAGGAAGGGACCAGGAACAACATTGTGTGCAAGAAGCTAGCGTATAGCGATCAAGCACG]

[+] EMBL CA759276             [TTTTTTTTTTTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTTCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACTCTAAACAATGACGGCTACTGATTAAGTATGATTAAGGACGTCCTAAGGTTTCCCTAGGGTGCATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTAGATGAGATGTGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCATAAGCTTTCCAACAAGTACTCATAGACCCCCGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGTCAGGAGGCTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTTGATCATGTATGCATTCGTTATGCTCGCCCTCTTTTCCTTCGTCCAAGCAAGTACCTCTGCAAACGAACACACACAAAACTCATTGTGTTGCCGCCACTCCGACCCTGCCCCCTGCTATTGACGGTTGTTATGTACCAGTTTCGACCACCAACTAGGGATCAGGAAGGGACCAGGAACAACATTGTGTGCAAGAAGCTAGCGTATAGCGATCAAGCACG]




>consensus_8803#0
TTTTTTTTTTTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTT
CTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACT
CTAAACAATGACGGCTACTGATTAAGTATGATTAAGGACGTCCTAAGGTTTCCCTAGGGT
GCATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTC
GGACTAGATGAGATGTGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGA
CGTGGAACCAAAACGATATGAAAGTAGACTTCATAAGCTTTCCAACAAGTACTCATAGAC
CCCCGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGT
TGTCAGGAGGCTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTTGATCATGTAT
GCATTCGTTATGCTCGCCCTCTTTTCCTTCGTCCAAGCAAGTACCTCTGCAAACGAACAC
ACACAAAACTCATTGTGTTGCCGCCACTCCGACCCTGCCCCCTGCTATTGACGGTTGTTA
TGTACCAGTTTCGACCACCAACTAGGGATCAGGAAGGGACCAGGAACAACATTGTGTGCA
AGAAGCTAGCGTATAGCGATCAAGCACG

consensusID : consensus_8803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 572
fasta sequence

                              [TTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTTCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACGTCTAAACAAGTGACGGCTACTGATTAAGTATGATTAGGGACGTCCTAAGGTTTCCCTAGGGTGCGATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTAGATGAGATGTGGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCAGTAAGCTTTCCAACAAGTACTCATAGACCCCCGGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGTCAGGAGGCCTGAATCCAAATCCAAAACGTGTAAAACTTTATCTCTTGTCTTCTATGGACCAAAAGTGATGTCGATGGGGTAGAAGTATACTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTGGATCATGTATGCACTTCGTTATG]

[-] EMBL BQ909014             [TTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTTCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACGTCTAAACAAGTGACGGCTACTGATTAAGTATGATTAGGGACGTCCTAAGGTTTCCCTAGGGTGCGATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTAGATGAGATGTGGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCAGTAAGCTTTCCAACAAGTACTCATAGACCCCCGGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGTCAGGAGGCCTGAATCCAAATCCAAAACGTGTAAAACTTTATCTCTTGTCTTCTATGGACCAAAAGTGATGTCGATGGGGTAGAAGTATACTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTGG                      ]
[-] EMBL BQ906302             [ TTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAA TTGGGGTTCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGAC TCTAAACAA TGACGGCTACTGATTAAGTATGATTAGGGACGTCCTAAGGTTTCCCTAGGGTGC ATACCCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTAGATGAGATGT GTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCA TAAGCTTTCCAACAAGTACTCATAGACCCCC GTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGTCAGGAGGCCTGAATCCAAATCCAAAACGTGTAAAACTTTATCTCTTGTCTTCTATGGACCAAAAGTGATGTCG TGGGGTAGAAGTATACTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTTGATCATGTATGCACTTCGTTATG]




>consensus_8803#1
TTTTTTGCAACACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGTTCTACAAACC
GATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGACGTCTAAACAA
GTGACGGCTACTGATTAAGTATGATTAGGGACGTCCTAAGGTTTCCCTAGGGTGCGATAC
CCCCTGGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCAGATTCGGACTA
GATGAGATGTGGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAATTTTGACGTGG
AACCAAAACGATATGAAAGTAGACTTCAGTAAGCTTTCCAACAAGTACTCATAGACCCCC
GGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAAGTTGATGTTGT
CAGGAGGCCTGAATCCAAATCCAAAACGTGTAAAACTTTATCTCTTGTCTTCTATGGACC
AAAAGTGATGTCGATGGGGTAGAAGTATACTTGGAGAAGGTCTTGGTATGGTCCCCAATC
AACCTCTTGGATCATGTATGCACTTCGTTATG

consensusID : consensus_8803#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 239
fasta sequence

                              [TTTTTTGAATACAACCAAAACTGCAAATGAATGATTAAGCTCACGAGTTGGGGTCTTACAAACCGATCTAGCGGCGAAACCGTTCTCGACAGAATAATCTAAGCAAAATCTGACTCTAAACGATGACTGCTACTGAGTAAAAATGATTAGGGACATCCTAGGGTTGCTCTAGGGTGCACACCCCCTTGGGCTAAGCCCACGACACAATTACAAGGCTTTCTACTCCTTCAGTCCAGTCA]

[+] EMBL CF332358             [TTTTTTGAATACAACCAAAACTGCAAATGAATGATTAAGCTCACGAGTTGGGGTCTTACAAACCGATCTAGCGGCGAAACCGTTCTCGACAGAATAATCTAAGCAAAATCTGACTCTAAACGATGACTGCTACTGAGTAAAAATGATTAGGGACATCCTAGGGTTGCTCTAGGGTGCACACCCCCTTGGGCTAAGCCCACGACACAA                                ]
[-] EMBL CF332357             [ TTTTTGAATACAACCAAAACTGCAAATGAATGATTAAGCTCACGAGTTGGGGTCTTACAAACCGATCTAGCGGCGAAACCGTTCTCGACAGAATAATCTAAGCAAAATCTGACTCTAAACGATGACTGCTACTGAGTAAAAATGATTAGGGACATCCTAGGGTTGCTCTAGGGTGCACACCCCCTTGGGCTAAGCCCACGACACAATTACAAGGCTTTCTACTCCTTCAGTCCAGTCA]




>consensus_8803#2
TTTTTTGAATACAACCAAAACTGCAAATGAATGATTAAGCTCACGAGTTGGGGTCTTACA
AACCGATCTAGCGGCGAAACCGTTCTCGACAGAATAATCTAAGCAAAATCTGACTCTAAA
CGATGACTGCTACTGAGTAAAAATGATTAGGGACATCCTAGGGTTGCTCTAGGGTGCACA
CCCCCTTGGGCTAAGCCCACGACACAATTACAAGGCTTTCTACTCCTTCAGTCCAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8803#0      TTTTTTTTTTTTTTTGCAAC-ACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGT 59
consensus_8803#2      -----TTTTTTGAATACAACCAAAACTGCAAATGAATGATTAAGCTCACGAGTT-GGGGT 54
consensus_8803#1      ---------TTTTTTGCAAC-ACAATTTCATATGAATGATTAAGCACTCGAATTTGGGGT 50
                               **   * **** * ** * ** ************** * *** ** *****

consensus_8803#0      TCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGAC 119
consensus_8803#2      CTTACAAACCGATCTAGCGGCGAAACCGTTCTCGACAGAATAATCTAAGCAAAATCTGAC 114
consensus_8803#1      TCTACAAACCGATCTAGCGGCGAAACTGTTCTTGACAGAATAATCTAAGCAAAACCCGAC 110
                        ************************ ***** ********************* * ***

consensus_8803#0      -TCTAAACAA-TGACGGCTACTGATTAAGTATGATTAAGGACGTCCTAAGGTTTCCCTAG 177
consensus_8803#2      -TCTAAACGA-TGACTGCTACTGAGTAAAAATGATTAGGGACATCCTAGGGTTGCTCTAG 172
consensus_8803#1      GTCTAAACAAGTGACGGCTACTGATTAAGTATGATTAGGGACGTCCTAAGGTTTCCCTAG 170
                       ******* * **** ******** ***  ******* **** ***** **** * ****

consensus_8803#0      GGTGC-ATACCCCCT-GGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCA 235
consensus_8803#2      GGTGC-ACACCCCCTTGGGCTAAGCCCACGACACAATTACAAGGCTTTCTACTCC--TTC 229
consensus_8803#1      GGTGCGATACCCCCT-GGGCTAAGCCCACGACACAATTACAAGGCCCAAAACCCAAATCA 229
                      ***** * ******* *****************************     ** *   *  

consensus_8803#0      GATTCGGACTAGATGAGATGTG-TGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAA 294
consensus_8803#2      AGTCCAGTCA-------------------------------------------------- 239
consensus_8803#1      GATTCGGACTAGATGAGATGTGGTGGCTTGTTTTGCAGATTCTCGGCAGCTCGGTAGAAA 289
                        * * * *                                                   

consensus_8803#0      TTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCA-TAAGCTTTCCAACAAGTACT 353
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      TTTTGACGTGGAACCAAAACGATATGAAAGTAGACTTCAGTAAGCTTTCCAACAAGTACT 349
                                                                                  

consensus_8803#0      CATAGACCCCCG-TAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAA 412
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      CATAGACCCCCGGTAATTCCTTCTAGATCAGTGGCTAGGTCAAGAGCCCCGAAGTTTGAA 409
                                                                                  

consensus_8803#0      GTTGATGTTGTCAGGAGGCTTGGAGAAGGTCTTGGTATGGTCCCCAATCAACCTCTTTGA 472
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      GTTGATGTTGTCAGGAGGCCTGAATCCAAATCCAAAACGTGTAAAACTTTATCTCTTGTC 469
                                                                                  

consensus_8803#0      TCATGTATGCATTCGTTATGCTCGCCCTCTTTTCCTTCGTCCAAGCAAGTACCTCTGCAA 532
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      TTCTATGGACCAAAAGTGATGTCGATGGGGTAGAAGTATACTTGGAGAAGGTCTTGGTAT 529
                                                                                  

consensus_8803#0      ACGAACACACACAAAACTCATTGTGTTGCCGCCACTCCGACCCTGCCCCCTGCTATTGAC 592
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      G-GTCCCCAATCAACCTCTTGGATCATGTATGCACTTCGTTATG---------------- 572
                                                                                  

consensus_8803#0      GGTTGTTATGTACCAGTTTCGACCACCAACTAGGGATCAGGAAGGGACCAGGAACAACAT 652
consensus_8803#2      ------------------------------------------------------------
consensus_8803#1      ------------------------------------------------------------
                                                                                  

consensus_8803#0      TGTGTGCAAGAAGCTAGCGTATAGCGATCAAGCACG 688
consensus_8803#2      ------------------------------------
consensus_8803#1      ------------------------------------