These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1767 fasta sequence [TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTTAATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGATCGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCACCCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATAGCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAACAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGGATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCT-GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG-AAGTGACGCGAGCCT-GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAATAAAAATATATATGAAAGATGGCATTATTACAAAAAAAAGA] [+] EMBL AK066292 [TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTTAATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGATCGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCACCCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATAGCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAACAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGGATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCT GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG AAGTGACGCGAGCCT GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAATAAAAATATATATGAAAGA ] [+] EMBL OSR28241A [ ATGGATGGNNGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGTGTCGACCTAGCTAGAAAGGTCGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGCAACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTACACTGTCTCTGCTGCATGCATGCATGCTGGCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCANGCAGGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGNATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGT ] [+] EMBL C72801 [ ATGCATGCATGCT GCTCACCTCATCTGATTGAGAGTTCAGAATTGTTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCATATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTATATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGACATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAACCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAAGTGACGCGAGCCTGGCCTTGAAT ] [-] EMBL CB683790 [ ATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATG AAGTGACGCGAGCCT GCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTT CCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCAATAATGGAAAATGATGATGTAAAAGTTGAGACGACTGAACTATAAGTAAAAATATATATGAAAGATGGCATTATTACAAAAAAAAGA] [+] EMBL CA753668 [ AGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATA ] consensusID : consensus_8815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCAATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCTTGGATGGA] [-] EMBL CB683400 [TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATGCAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAGGCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTCTCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCATTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTAACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGATCGAGCTGCAGCAATGATCTTTCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTCTCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGCAGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTGTGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCATGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCAATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCTTGGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8815#0 TCTCTCTCTCACACACACACAAATTAAATTGCGAGCAAAAAAGAAAGATTGCGGCCATGC 60 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 TCTCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTA 120 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 GATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTAGGTCATCGATGCGCATCT 180 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 GGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGAAAACATGGTGCCCTCGATCTT 240 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 AATTATATCTTACTTATATATCTACCTAGCTATATCTCCTGCCTGCTCTAATTCTTGGAT 300 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 CGATCGCGATGGAGATTAATTGATCTGTACATCGATCCATGCATATCAGATACTGCTCAC 360 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 CCGGCCGCCATCTGCGTGCAATTCGATCTAGCAGCTGGGAAATGAAAGCTAAGAAAGATA 420 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 GCGTGCACGAGCGTGCAGAATGGCAGCATATGTATGCATTATTCAGTACTGCTAGATGAA 480 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 CAGAATCTAGAAAAAGATGAACTGAACAGCAGCAGCAGCAGCAGATCGTAGGATGGATGG 540 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 ATGGACGGATGGAGCAAGCTAAGCTAAGCTTTCGTTTTGTCGATCCATCCGTCCATCGGT 600 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 GTCGACCTAGCTAGAAAGGCTGACCTGTCGCGTCGTCCATCCAAGATCGATCCAACCAGC 660 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 AACCAGGCATCAGACAGGCTCTTTCTTGTCCAGCTGCTGCTGCTGCTAGTACACATACTA 720 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 CACTGTCTCTGCTGCATGCATGCATGCTGCTCACCTCATCTGATTGAGAGTTCAGAATTG 780 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 TTGAGAGCAAGCAAGAAATTGAGAAACGGCCAGGACAGATTGGATTGATCTTAATTGGCA 840 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 TATATGCTGCTCGATCGATACTGTCTGTCAGTTCTCAGTTCGTCGATCGATCAAGTCTAT 900 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 ATTTGGATATCTGAATCTCTGCAAATGCCAACTCGACCACTAAGCAATTCATCAATGGAC 960 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 ATGATCATAGTAATGTCGATCGACGTGCAGTGTCACTCATTGTTGGGAGCACGGTCAAAA 1020 consensus_8815#1 ------------------------------------------------------------ consensus_8815#0 CCTCCAGTTCATATCATATCATATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATG 1080 consensus_8815#1 ---------------------TATGAAATCGATCTCAAGCTCAAGCAGTTTCGATAGATG 39 *************************************** consensus_8815#0 CAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAG 1140 consensus_8815#1 CAAAATTGAAGATGGAAGTATAAATAACTGCTACTGTATATACATATGGAGGGCAGGAAG 99 ************************************************************ consensus_8815#0 GCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTC 1200 consensus_8815#1 GCAGGCAGGAGATTGATGAAGTGACGCGAGCCTGCCTTGAATTGTGCTAGTTTCTCTTTC 159 ************************************************************ consensus_8815#0 TCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCA 1260 consensus_8815#1 TCTCTGCGCGTGTGCTTGCTGCCCCTAGCTAGCTAGCGAAGCGTGTGCTTTCACTGTGCA 219 ************************************************************ consensus_8815#0 TTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTA 1320 consensus_8815#1 TTGCATATGATAGGAGGTAGTACTCCACTACTCCATGGTGAACTGGTGGTTGCATTGCTA 279 ************************************************************ consensus_8815#0 ACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGA 1380 consensus_8815#1 ACCACAGCCATAGAGCTACTGAGCTAGCTGCGAATAATTTCATTCATGTTTGCCGATCGA 339 ************************************************************ consensus_8815#0 TCGAGCTGCAGCAATGATCTTTCCCTGCAGCAATGATCACGTTGCATGCTTACTTGTTTC 1440 consensus_8815#1 TCGAGCTGCAGCAATGATCTTTCC-TGCAGCAATGATCACGTTGCATGCTTACTTGTTTC 398 ************************ *********************************** consensus_8815#0 TCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGC 1500 consensus_8815#1 TCTTCTTTTAACTTTTTTCCCCTCTCCTTTCTTTCATCCATAGTTTTTACGTTAATATGC 458 ************************************************************ consensus_8815#0 AGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTG 1560 consensus_8815#1 AGATGCAGGCAGCACACCTTCTTCTTGCTCCACCGGCTACCAGCACCTAAGTAATTAGTG 518 ************************************************************ consensus_8815#0 TGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCA 1620 consensus_8815#1 TGTTCATGCGCCTCTGATTATATATGTACATATATATATACTCCAATATATGTGGTAGCA 578 ************************************************************ consensus_8815#0 TGGATATATATACAATTCATGTCTTTTGTATGTACTAATTAATGTGTATTGTCATGTGCA 1680 consensus_8815#1 TGGATATATATACAATTCATGTCTTTTGTATGTATTAATTAATGTGTATTGTCATGTGCA 638 ********************************** ************************* consensus_8815#0 ATAATGGAAAATGATGATG--TAAAAGTTGAGACGACTGAACTATAAATAAAAATATATA 1738 consensus_8815#1 ATAAAGAGCCTGTCTGATGCCTGGTTGCTGGTTGGATCGATCT-TGGATGGA-------- 689 **** * ***** * * ** ** ** ** * ** * consensus_8815#0 TGAAAGATGGCATTATTACAAAAAAAAGA 1767 consensus_8815#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||