cluster # 8821

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Oryza sativa
cluster # 8821 cluster # 8821 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8821#0 length = 692 sequences # 4

consensus_8821#1 length = 367 sequences # 1
consensus_8821#2 length = 329 sequences # 1

consensusID : consensus_8821#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 692
fasta sequence

                              [CACTTCCCCTCCACTCCTCTCCCACGTCCCTCTCCTCCACACCTCTCCCCTCCCCTCCCCTCCCCTCACCTCTCTTCCTCTCCCCGGCCGCCGGCGGCGGCGT-CTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCGGGCGGACGGCAGCGGCTCCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCATGTATGGAGGATTGTGTTGGATTTTGTAAAAA]

[+] EMBL AK073111             [CACTTCCCCTCCACTCCTCTCCCACGTCCCTCTCCTCCACACCTCTCCCCTCCCCTCCCCTCCCCTCACCTCTCTTCCTCTCCCCGGCCGCCGGCGGCGGCGT CTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCGGGCGGACGGCAGCGGCTCCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATT                                       ]
[+] EMBL C96982               [               CCTCTCCCACGTCCCTCTCCTCCACACCTCTNCCCTNCCCTCCCCTCCCCTCACCTCTCTTNCTCTCCCCGGCCGCCGGCGGC GCGTNCTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGANGGCGGTTGGGGGANGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTTGGGCGGACGGCGGGTTCCCTCCGTACCTCCCTCCCAGATCTNGNCGGAAGGGGGAAGGGGGAAGANGCCGGTTGCCAn                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C96983               [                                                                                                                                                                                                                                                 GGGTGGAAGNCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCGGGNGGACGGCAGCGGCTCCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCATGTATGGAGGATTGTGTTGGATTTTGTAAAAA]
[-] EMBL CB680034             [                                                                                                                                                                                                                                                                                                                                                                                            CCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTAAGGGGGATTGTGTTGATGAATGAATTTTGTTCATG                              ]




>consensus_8821#0
CACTTCCCCTCCACTCCTCTCCCACGTCCCTCTCCTCCACACCTCTCCCCTCCCCTCCCC
TCCCCTCACCTCTCTTCCTCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAG
CAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGC
GGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGT
GGGTGGAAGGCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCC
GGAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCGGGCGGACG
GCAGCGGCTCCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATT
GGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAA
CTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCG
GCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGAT
GATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCA
TGTATGGAGGATTGTGTTGGATTTTGTAAAAA

consensusID : consensus_8821#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTAAGCTCGACTGCTCTCTCACCTCTTCTCTTCTTATCCTCACTTCTCTCTAATCCCGGTGGTGGTGGTTTAGGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCATGTAAAAAAAGGA]

[-] EMBL CB683391             [CCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTAAGCTCGACTGCTCTCTCACCTCTTCTCTTCTTATCCTCACTTCTCTCTAATCCCGGTGGTGGTGGTTTAGGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCATGTAAAAAAAGGA]




>consensus_8821#1
CCTCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCC
GGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTC
TCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGGCTCGGCGACAAGTAAGCT
CGACTGCTCTCTCACCTCTTCTCTTCTTATCCTCACTTCTCTCTAATCCCGGTGGTGGTG
GTTTAGGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTT
TATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATGAATTTTGTTCATGTAAA
AAAAGGA

consensusID : consensus_8821#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGACGCCGGTAGTCGCCGCCGCCTTCTGCCCCCGGGCCGCTGGCCGGCCACCAATCTCCCCCCTCCGCTCTCCGGCCAGATCTGGGAGGGAGG]

[+] EMBL CB683784             [TCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGACGCCGGTAGTCGCCGCCGCCTTCTGCCCCCGGGCCGCTGGCCGGCCACCAATCTCCCCCCTCCGCTCTCCGGCCAGATCTGGGAGGGAGG]




>consensus_8821#2
TCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAGCAGGTGGCTCCCGGCCCC
TCCCTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGT
CGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATGCGGTGGGTGGAAGGCGGTGGGG
CGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCGGAGGGGGGAGGGGGGAC
GCCGGTAGTCGCCGCCGCCTTCTGCCCCCGGGCCGCTGGCCGGCCACCAATCTCCCCCCT
CCGCTCTCCGGCCAGATCTGGGAGGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8821#0      CACTTCCCCTCCACTCCTCTCCCACGTCCCTCTCCTCCACACCTCTCCCCTCCCCTCCCC 60
consensus_8821#2      ------------------------------------------------------------
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      TCCCCTCACCTCTCTTCCTCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAG 120
consensus_8821#2      ------------------TCTCCCCGGCCGCCGGCGGCGGCGTCTCCCGGCGGCGGGCAG 42
consensus_8821#1      ------------------CCTCCCTCCCAGATCTGGCCGGAG------AGCGGAGGGGGG 36
                                         *****   * *     * *** *       **** ***  *

consensus_8821#0      CAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTG--GGGGAGGGCG 178
consensus_8821#2      CAGGTGGCTCCCGGCCCCTCCCTCCCAGATTTGGCCAGAGGGCGGTTG--GGGGAGGGCG 100
consensus_8821#1      AGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCGGTGACG 96
                          ***   ******     * *   *         *  ****  *   ** *  * **

consensus_8821#0      GCGGGGCGCGGTGGGGC--GGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATG 236
consensus_8821#2      GCGGGGCGCGGTGGGGC--GGTCGGCAGCATGGCGCGGCGGGGCGGTCGGCGGCGTTATG 158
consensus_8821#1      GCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGG 156
                      **      *       *  *     ** *  *** * * ****     *   * *    *

consensus_8821#0      CGGTGGGTGGAAGGCG-GTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCT---CCCAG 292
consensus_8821#2      CGGTGGGTGGAAGGCG-GTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCT---CCCAG 214
consensus_8821#1      CGGCGGCTCGGCGACAAGTAAGCTCGACTGCTCTCTCACCTCTTCTCTTCTTATCCTCAC 216
                      *** ** * *  * *  **  *   *** **     * *  * ** ** * *   * ** 

consensus_8821#0      ATCTGGCCGGAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCG 352
consensus_8821#2      ATCTGGCCGGAGGGGGGAGGGGGGACGCCGGTAGTCGCCGCCGCCTTCTGCCCCCGGGCC 274
consensus_8821#1      TTCTCTCTAATCCCGGTGGTGGTGGTTTAGGTGCTGCATCCAGGATGGGGCAGTGGTGAT 276
                       ***  *       **  * ** *     *    *       *  *   *       *  

consensus_8821#0      GGCG-GACGGCAGCGGCTCCCCTCCCTCCCTCCCTC--CCAGATCTGGCCGGAGAGCGGA 409
consensus_8821#2      GCTG-GCCGGCCACCAATCTCCCCCCTCCGCTCTCCGGCCAGATCTGGGAGGGAGG---- 329
consensus_8821#1      GGAGTAGCACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTG 336
                      *  *   *  *      *        *            **  * ***  *         

consensus_8821#0      GGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGACTACCGGCG 469
consensus_8821#2      ------------------------------------------------------------
consensus_8821#1      ATGAATGAATTTTGTTCATGTAAAAAAAGGA----------------------------- 367
                                                                                  

consensus_8821#0      GTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGA 529
consensus_8821#2      ------------------------------------------------------------
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      GGCTGGCGGCGGCTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAG 589
consensus_8821#2      ------------------------------------------------------------
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      CACCCTTGGATGATTTTTATTTGAATTTTGTTCATGTATGGAGGATTGTGTTGATGAATG 649
consensus_8821#2      ------------------------------------------------------------
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      AATTTTGTTCATGTATGGAGGATTGTGTTGGATTTTGTAAAAA 692
consensus_8821#2      -------------------------------------------
consensus_8821#1      -------------------------------------------