These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTAGCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCCCTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGCTGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATGCTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTCTACTGGTAAAAAAA] [+] EMBL C98329 [ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTAGCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCCCTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGCTGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATGCTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTCTACTGGTAAAAAAA] consensusID : consensus_8824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 591 fasta sequence [AAACAACAGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG-GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT-CGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGGATATTGTA-GGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTCTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAATCTGTCTAC] [+] EMBL CB096466 [AAACAACAGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGGGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTGGCTAGATTCTCTTCTTCTCCGTTCATTAAAGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTACCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTA GGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTCTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAATCTGTCTAC] [+] EMBL OS2007A [ AGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGGATATTGTAGGGCCTTACAAATTCTTTGGTGTATATAGGATA ] [+] EMBL OSC16291 [ AGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGNGGAGGGCTCAGCAGGATGCTGAGGCGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATNATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTNCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGNATATTGTA GGCCTAACAAATTCTTTNGTGTATATAG ] [+] EMBL OSC30351 [ AGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTACTTC TCCTNTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGNAGGAGNGCTCAGCAGGATGCTGAGGNGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATNATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCT ] [+] EMBL OSC29641 [ AGCTAGCTCAAGATCCAGCACTAGTGACATTGAGCCTTTCTTC TCCNCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTNCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGNCGGAGGAGGAGGAGGAGNAGGGCTCAGCAGGATGCTGAGGAGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGTCCGTCATNCTCCTCTGCTATCATGACTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8824#0 ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTA 60 consensus_8824#1 -------------------------------------------AAACAA--CAGCAGCTA 15 ****** ********* consensus_8824#0 GCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCC 120 consensus_8824#1 GC-TAGCTGC-AGATCCAG--CACTAGTGAC-ATTGAGCC--TTTCTTCTT--GCTCTTC 66 ** ******* ****** ********* ******** ** **** * ** ** * consensus_8824#0 CTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGC 180 consensus_8824#1 CTTTGCCT--AGCTA-GCTAGATTCTCTTCTTCT--CCGTTCGTTAC-GGATGGTTAAGC 120 ******* **** ******* * ** *** *********** ************ consensus_8824#0 TGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATG 240 consensus_8824#1 TGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGA-GGAGGAGGAGGGCTCAGCAGGATG 179 **** * **************** ********* * ************* ********** consensus_8824#0 CTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTG 300 consensus_8824#1 CTGAGGGAGCAGAAGGCCAGGCTCTACATCATC-AGGCGATGCGTCGTCATGCTCCTCTG 238 ********************************* ************************** consensus_8824#0 CTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGG 360 consensus_8824#1 CTATCATGACTGATCTGAATGATG-ATGGTCTGAATC-TGCTGCTGTTCATC-GTCCTGG 295 ************************ ************ ************** ******* consensus_8824#0 CGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGG 420 consensus_8824#1 CGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGG 355 ************************************************************ consensus_8824#0 TTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAG 480 consensus_8824#1 TTCTAGGGATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAG 415 ******* **************************************************** consensus_8824#0 ATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTAC 540 consensus_8824#1 ATCTACTGACGGTTTTGATCATCTTCTTCTC------TTTTTTTTGTGAGTTTGTGGTAC 469 ****************************** *********************** consensus_8824#0 TCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGA 600 consensus_8824#1 TCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGA 529 ************************************************************ consensus_8824#0 TCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTC 660 consensus_8824#1 TCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAA-TCTGTC 588 ***************************************************** ****** consensus_8824#0 TACTGGTAAAAAAA 674 consensus_8824#1 TAC----------- 591 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||