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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1227 fasta sequence
[CGAGCCCTCTTCTTCCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGGAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATCGTCGT]
[+] EMBL AK103121 [CGAGCCCTCTTCTTCCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGGAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAAC ]
[+] EMBL AK059634 [ GGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACT GTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATCGTCGT]
[-] EMBL CF280843 [ AGATGAAAATTGTCCCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAACCCGGTTGGATCACCCTCATCAATCACA ]
consensusID : consensus_8827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGGTGTGGACGATCACTGGGGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAAATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAATAANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT]
[+] EMBL CA764877 [GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGGTGTGGACGATCACTGGGGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAAATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAATAANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT]
consensusID : consensus_8827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence
[CCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAAC-ATCATTAGTTCTGGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGC]
[+] EMBL CF280842 [CCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAAC ATCATTAGTTCTGGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATC ]
[+] EMBL CA999222 [ GGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAG AACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAA GGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCT GGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8827#0 ----------------------------------CGAGCCCTCTTCTTCCCGGCAACCGC 26
consensus_8827#2 ------------------------------------------------CCCGGCAACCGC 12
consensus_8827#1 GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAG 60
* **
consensus_8827#0 GGCGGCGGAGACGAGCGCGA-CGCGGCGATTCCCCCCAATTGCTCCTCCCGCTT--CCGC 83
consensus_8827#2 GGCGGCGGAGACGAGCGCGA-CGCGGCGATTCCCCCCAATTGCTCCTCCCGCTT--CCGC 69
consensus_8827#1 GTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCAT 120
* ** **** ** **** **** * * * * ** *
consensus_8827#0 TCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTG 143
consensus_8827#2 TCCATCTGGACGGG----------------------------------GCGCAGCACTTG 95
consensus_8827#1 TCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTC----AGAAGAAGGTGAA 176
** ** * * * *
consensus_8827#0 AGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTA-TACATGGAGAAAGCGAG 202
consensus_8827#2 AGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTA-TACATGGAGAAAGCGAG 154
consensus_8827#1 ACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGC 236
* **** *** * * * * * * * * * * **** ** ** *
consensus_8827#0 -GTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACAT-------------CTTTG 248
consensus_8827#2 -GTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTG 213
consensus_8827#1 TATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTT 296
*** ** ** * * * ** * *** * **
consensus_8827#0 CGACGGATTTTCTCGAGATA-AGGGCCAAAGAGCCGTCTGTTCATGTT--CTGGTTATTC 305
consensus_8827#2 CGACGGATTTTCTCGAGATA-AGGGCCAAAGAGCCGTCTGTTCATGTT--CTGGTTATTC 270
consensus_8827#1 TATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTT 356
***** * ** * ** * * * ** ** * *** ** * *
consensus_8827#0 CCGGAAATCCAGGTATCGTTGCA-TTCTACAAGGAC-TTTGTTGAAGAGCTCTATGAGAA 363
consensus_8827#2 CCGGAAATCCAGGTATCGTTGCA-TTCTACAAGGAC-TTTGTTGAAGAGCTCTATGAGAA 328
consensus_8827#1 CATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGC 416
* * * * ** * * * * ** * * * ** * * ** **
consensus_8827#0 -CCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTC--ACATAGCAAAAAGGA 420
consensus_8827#2 ACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTC--ACATAGCAAAAAGGA 386
consensus_8827#1 GTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGA 476
* * * ** **** * * * * * ** * * * * ***
consensus_8827#0 ----------TGCAGAGCGTGGAC-GATTGTTTTCGTTGCATGAACAAATTGATCACAAG 469
consensus_8827#2 ----------TGCAGAGCGTGGAC-GATTGTTTTCGTTGCATGAACAAATTGATCACAAG 435
consensus_8827#1 ATTTCATCAGTGCAAAACAGGACCAGATTGCATTT-CTGTTTGGTGTGGACGATCACTGG 535
**** * * * * ***** ** ** ** ****** *
consensus_8827#0 G--TCGATTTCA---TTGAGCAAGAATTTCAA------CATTCGGAACAA--TCATTAGT 516
consensus_8827#2 GG-TCGATTTCA---TTGAGCAAGAATTTCAA------CATTCGGAACA---TCATTAGT 482
consensus_8827#1 GGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGT 595
* ** ** ** *** * * ** **** * ** * * **
consensus_8827#0 TCTGG-TT--GGTCATTCAATTGGTGCCTACATATGCCTGGAAATC----TTCAAAAGAC 569
consensus_8827#2 TCTGGGTT--GGTCATTCAATTGGTGCCTACATATGCCTGGAAATC----TTCAAAAGAC 536
consensus_8827#1 CGAAACTGAAGGCCATACACACGGG--CTATTGCTGCACGGAAGCTGGATCGTTTTGGGC 653
* ** *** ** ** *** *** **** * *
consensus_8827#0 TTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCC-ATTTTTAACACTCAACAAGAAG 628
consensus_8827#2 TTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCC-ATTTTTAACACTCAACAAGAAG 595
consensus_8827#1 TGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAA 713
* **** * * * * **** ** *** ** * ** * * **** * ***
consensus_8827#0 TCCATGGAGCAATCAG------CTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAA 682
consensus_8827#2 TCCATGAAGCAATCAG------CTATTGGATATATTGC---------------------- 627
consensus_8827#1 ATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAAT 773
* * **** **** *** * *
consensus_8827#0 GGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATC 742
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 AANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT---------------------- 811
consensus_8827#0 ATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCAT 802
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 CTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAG 862
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 CTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTG 922
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 TTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCT 982
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 CCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAA 1042
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 GCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTG 1102
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 GAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAG 1162
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 ATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATC 1222
consensus_8827#2 ------------------------------------------------------------
consensus_8827#1 ------------------------------------------------------------
consensus_8827#0 GTCGT 1227
consensus_8827#2 -----
consensus_8827#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||