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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1118 fasta sequence
[CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCCTGCTGCTGTTGGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATCGGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAGCGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAAGCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAGGATACCTGATGAACTCATCGCAGCCTTTCGGACGACTGAAAGATGTTTTCTGCTACAAATATGACTGGCTATGGTCCAATTCTGAATTTTTAAGTATAGTGAAGATTGAGACCGATCAGCGCCAAGTGGCCTGCTGATTGGAAAGATCATCACTTTGCAAGCAGTATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTTTTTGCCCTTGTAAAACTCTGGGAAAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCTATGATGCAGTGCTTTGTT]
[+] EMBL AK065754 [CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCCTGCTGCTGTTGGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATCGGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAGCGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAAGCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAGGATACCTGATGAACTCATCGCAGCCTTTCGGACGACTGAAAGATGTTTTCTGCTACAAATATGACTGGCTATGGTCCAATTCTGAATTTTTAAGTATAGTGAAGATTGAGACCGATCAGCGCCAAGTGGCCTGCTGATTGGAAAGATCATCACTTTGCAAGCAGTATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTTTTTGCCCTTGTAAAACTCTGGGAAAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCTATGATGCAGTGCTTTGTT]
[+] EMBL CA754929 [ ACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGC GGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACNACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGGAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCC ]
consensusID : consensus_8837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence
[GAGGCGTCGAGATGGTGGTGGCATCCGGTGGAGGGCGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAGACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGATATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGATATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGAATGTTGTGTGCTTGCCTGACTAAATTATCAAAA]
[+] EMBL AK103771 [GAGGCGTCGAGATGGTGGTGGCATCCGGTGGAGGGCGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAGACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGATATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGATATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCCCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGAATGTTGTGTGCTTGCCTGACTAAATTATCAAAA]
[-] EMBL CB966668 [ ttGAAGTGATTGAAGCT AAATTGCCAGAAATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGNCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCGTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGAGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCATTCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGG ]
[+] EMBL CB000426 [ AGGCCAGTATGCGCCTGCTGCTGTTCCCGGCCGTCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGA ]
[-] EMBL CB965760 [ tCCGATCGTCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGAGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8837#0 CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGT 60
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 CGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCC 120
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 GGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGA 180
consensus_8837#1 ------------------------------------------------------------
consensus_8837#0 GTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGG 240
consensus_8837#1 ----------------GAGGCGTCGAGATGGTGGTGGCATC---------CGGTGGAGGG 35
* **** ************** ** *** ** ***
consensus_8837#0 GGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAG 300
consensus_8837#1 CGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAG 95
**************************************** *****************
consensus_8837#0 ACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGAT 360
consensus_8837#1 ACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGAT 155
**** *** ***** *** ******** ******** ***** ** ** ** ******
consensus_8837#0 ATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGG 420
consensus_8837#1 ATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGA 215
***************** ******************* ************ ********
consensus_8837#0 TACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTT 480
consensus_8837#1 TATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTT 275
** ** *********************** ******************** *********
consensus_8837#0 GCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCT 540
consensus_8837#1 GCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCT 335
** ******************************** ******* ***** **********
consensus_8837#0 GCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGG---GCCAGTATGCGCCT 597
consensus_8837#1 GCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCT 395
*********** *********** ** **** ********** **************
consensus_8837#0 GCTGCTGTT------GGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATC 651
consensus_8837#1 GCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATC 455
********* *** * ******* ***** ***** ******** ***** ***
consensus_8837#0 GGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAG 711
consensus_8837#1 GGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAG 515
************* *** ***** ***** ***************** **** ** ***
consensus_8837#0 CGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAA 771
consensus_8837#1 AGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAA 575
* ** ******** ********* * ********* ************** * *****
consensus_8837#0 GCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAG 831
consensus_8837#1 GCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTA-ACATGTAG 634
******** * ******* ***** * ********** *** * **** * **
consensus_8837#0 GATACCTGATGAACTCATCGCAGCCTTTCGGACGAC-TGAAAGATGTTTTCTG--CTACA 888
consensus_8837#1 GATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATT 694
*** ****** * * * * * ** *** ** *** * * *** *** * *
consensus_8837#0 AATATGACTGGCTATGGTCCAATTCTG-AATTTTTAAGTATAGTGAAGATTGAGAC--CG 945
consensus_8837#1 GACATGGTTGGCT-TGGTCCAAACATATGAATTTTGAGCAC--TTGGGATTGAAGCTCCA 751
* *** ***** ******** * * **** ** * * ****** * *
consensus_8837#0 ATCAGCGCCAAGTGGCCTGCTGATTGGAAA-GATCATCACTTT---------GCAAGCAG 995
consensus_8837#1 ATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTG 811
**** ** *********** ********** ** **** *** **** * *
consensus_8837#0 TATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTT--------TTTGC 1047
consensus_8837#1 GAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATC 871
* * *** ** *** * * ********** ***** ** *
consensus_8837#0 CCTTGTAAAACTCTGGGA-----AAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCT-- 1100
consensus_8837#1 CCTTCTCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGA 931
**** * * *** * * ** *** * * * ** ** * * *
consensus_8837#0 ATGATGCAGTGCTTTGTT---------------- 1118
consensus_8837#1 ATGTTGT-GTGCTTGCCTGACTAAATTATCAAAA 964
*** ** ****** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||