cluster # 8839

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Oryza sativa
cluster # 8839 cluster # 8839 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8839#0 length = 549 sequences # 5

consensus_8839#1 length = 434 sequences # 1

consensusID : consensus_8839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 549
fasta sequence

                              [TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAAAA]

[+] EMBL AK062737             [TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACA                     ]
[+] EMBL CB656916             [              GGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATAT                  ]
[+] EMBL CB656919             [              GGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATAT                  ]
[+] EMBL CF280415             [                             TCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAA  ]
[-] EMBL CF280416             [                                                                                                                                                                         GGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTAGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAAAA]




>consensus_8839#0
TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCG
TGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACT
TCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGC
TCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCT
CTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCA
CCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTT
TCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTT
TCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCA
TCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTT
TAAAAAAAA

consensusID : consensus_8839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCAANANAAAAAAANAAA]

[+] EMBL CA756512             [GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCAANANAAAAAAANAAA]




>consensus_8839#1
GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTGCTCCGCCGCGGC
GACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTC
CCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAG
GGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTC
TTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCTCGTCGAGTCGT
CTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTG
GATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCAA
NANAAAAAAANAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8839#0      TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCG 60
consensus_8839#1      ----------------GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCG 44
                                      ********************************************

consensus_8839#0      TGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACT 120
consensus_8839#1      TGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACT 104
                      *** ********************************************************

consensus_8839#0      TCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGC 180
consensus_8839#1      TCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGC 164
                      ************************************************************

consensus_8839#0      TCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCT 240
consensus_8839#1      TCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCT 224
                      ************************************************************

consensus_8839#0      CTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCA 300
consensus_8839#1      CTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCA 284
                      ************************************************************

consensus_8839#0      CCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTT 360
consensus_8839#1      CCGC-TCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTT 343
                      **** *******************************************************

consensus_8839#0      TCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTT 420
consensus_8839#1      TCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTT 403
                      ************************************ ***********************

consensus_8839#0      TCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCA 480
consensus_8839#1      TCAACTGTTGCATTCAAN-ANAAAAAAANAAA---------------------------- 434
                      ****************   *       *   *                            

consensus_8839#0      TCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTT 540
consensus_8839#1      ------------------------------------------------------------
                                                                                  

consensus_8839#0      TAAAAAAAA 549
consensus_8839#1      ---------