These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1083 fasta sequence [CTTTCTTCCCCGCAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGG-CGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAAAGACATGCAAATTCTACAATGAAATGGATTGGATCATTGGAGAAACTTCTGAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGTAAATTTGATGCAATTAT-CCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGCTGCAATTGAAATTAAAAAAAAAA] [+] EMBL AK059829 [CTTTCTTCCCCGCAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGG CGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAAAGACATGCAAATTCTACAATGAAATGGATTGGATCATTGGAGAAACTTCTGAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGTAAATTTGATGCAATTAT CCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGCTGCAATTGAAATT ] [+] EMBL CA758955 [ CCGATACGCTACCACGGGCCGCGCTCCCCTGCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGGTTTTGTTCTGCTCTTCACTGGTGGGGCTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATGGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTGTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGACAGGATTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGGACCATCTCATTTGGTGCTGGCTTTTTCCTGGATCTCATTGGGGGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAGAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGCTTCTTATGATGTAGCAACTGAAGGTTCTGGTGGGTTACAACAGCAAGTGGGTCTCCCAGTGTGTAATC ] [-] EMBL CA762273 [ GGCTTTNTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTTTTTTGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTA CTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCCCTGAATTGTTTGGCCAAAGACATGCAAATTTTTCAATGAAATGGATTGGATCCTTGGAGAAACTTTTGAAGCCAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGTCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTTTGCGCCCCTGATAGCTTGGAAGAAGTAAATTTGATGCAATTATCCCCAACTTATGTTCCTTTGATAGCTTGAAGAAAGTAAATTTGCTGCCATTGAAAAAAAAAAAAAAA] consensusID : consensus_8845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTNNNNTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAANNNCATGCAAATTCTACNNTGAAATGGATTGGATCATTNNNNNNNCTTCTGANNNNNNCCNNN] [+] EMBL CF290934 [TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACAT ] [+] EMBL CF196582 [ TTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTNNNNTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAANNNCATGCAAATTCTACNNTGAAATGGATTGGATCATTNNNNNNNCTTCTGANNNNNNCCNNN] consensusID : consensus_8845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGTACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATGAAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAACTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCGTAAAAAA] [-] EMBL CF290933 [CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGTACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATGAAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAACTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8845#0 ----CTTTCTTCCCCGCA--GACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCG 54 consensus_8845#1 TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCG 60 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 CGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTC 114 consensus_8845#1 CGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTC 120 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 CCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACA 174 consensus_8845#1 CCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACA 180 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 ATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTG 234 consensus_8845#1 ATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTG 240 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 GAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGG 294 consensus_8845#1 GAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGG 300 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 GCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAAT 354 consensus_8845#1 GCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAAT 360 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 TCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGG 414 consensus_8845#1 TCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGG 420 consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 TTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCT 474 consensus_8845#1 TTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCT 480 consensus_8845#2 -------CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGT 53 * ** **** *** * ** * **** * * * **** * * * consensus_8845#0 TCAGTGGATTC-TGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGG 533 consensus_8845#1 TCAGTGGATTC-TGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGG 539 consensus_8845#2 ACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATG 113 ** ** * * *** * * *** ** ***** * * * * * * consensus_8845#0 ATATTTCAACAACCATT-TGTCACATCGTTCCTTGACCGCTACAGAGGAAAACG-GGTTC 591 consensus_8845#1 ATATTTCAACAACCATT-TGTCACATCGTTCCTTGACCGCTACAGAGGAAAACG-GGTTC 597 consensus_8845#2 AAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAG 173 * ** * **** * * * * * * * ** ** *** consensus_8845#0 CAGTGTAGCACAGCTAT-GTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAA 650 consensus_8845#1 CAGTGTAGCACAGCTAT-GTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAA 656 consensus_8845#2 CAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAA 233 **** ** * ***** * ** ** * * *** * ** ** consensus_8845#0 CAGCAAGTGGTTCTCCCA-ATGTGTA-ATCCTTTTTCTCTAAATGTTTACTTGCTGGTAG 708 consensus_8845#1 CAGCAAGTGGTTCTCCCA-ATGTGTA-ATCCTTTTTCTCTAAATGTTTACTTGCTGGTNN 714 consensus_8845#2 CAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTAT 293 *** *** * ** ** * * ** * * * * * * **** ** consensus_8845#0 GTTTGTT-CTTTTGTAAATT--ACAACCCTGGACCTCCA---CTGAATCGTTTGGCCAAA 762 consensus_8845#1 NNTTGTT-CTTTTGTAAATT--ACAACCCTGGACCTCCA---CTGAATCGTTTGGCCAAN 768 consensus_8845#2 TGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAA 353 * * *** ** * * * * * * * * *** * ** ** * consensus_8845#0 GACATGCAAATTCTACAA-TGAAATGGATTGGATC-ATTGGAGAAACTTCTGAAGCAAGC 820 consensus_8845#1 NNCATGCAAATTCTACNN-TGAAATGGATTGGATC-ATTNNNNNNNCTTCTGANNNNNNC 826 consensus_8845#2 CTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCG 413 *** *** * ** ** * * ** * *** consensus_8845#0 CCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTA 880 consensus_8845#1 CNNN-------------------------------------------------------- 830 consensus_8845#2 TAAAAAA----------------------------------------------------- 420 consensus_8845#0 CATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTT 940 consensus_8845#1 ------------------------------------------------------------ consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 GTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGT 1000 consensus_8845#1 ------------------------------------------------------------ consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 AAATTTGATGCAATTATCCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGC 1060 consensus_8845#1 ------------------------------------------------------------ consensus_8845#2 ------------------------------------------------------------ consensus_8845#0 TGCAATTGAAATTAAAAAAAAAA 1083 consensus_8845#1 ----------------------- consensus_8845#2 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||