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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1523 fasta sequence
[TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCACTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCACTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCCCTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATTTTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATGTCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGAAAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAGTTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATATAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGAAAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAATTTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT-GTGGGTT-GAGCGGTTCAATAACACCAGACAT-GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACATATAATATTTTTGTCGAGAAATAC]
[+] EMBL CA765782 [TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCACTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCACTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCCCTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATTTTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATGTCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGAAAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAGTTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATATAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGAAAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAATTTACAGCTCATAAATTAANGCTCTTCAAAATGGNAAATGTGAGCATGGGCATGGTGGGTTGGAGCGG ]
[+] EMBL CB669055 [ ccttTACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGCGCACTGGG AAGTGGGCTGTCACTTATG AGGAGTGGCCAGAAGAGGATTACCCAACATATGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATT GTGTCAGAATTTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGGTT GAGCGGTTCAATAACACCACACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTACAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATG ]
[+] EMBL CA999061 [ AGGCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGCTT GAGCGGTTCATTAACACCAGACATGGTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTAT ]
[-] EMBL CB650947 [ GCTCTTCAAGATGGAAGATGTGAGCATGGGCAT GTGGGTT GAGCGGTTCAATAACACCAGACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCGCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACATATAATATTTTTGTCGAGAAATAC]
[-] EMBL CB651517 [ TAACACCAGACAT GTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCGCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCGTTCTTGTTTTTAGATTCAGGTTGTATCGCTGCAGCTC ]
consensusID : consensus_8846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTGAGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA]
[-] EMBL CA758956 [TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTGAGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTGGATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGTGGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACTGGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8846#0 TTGATGGACGACACGTCACATCATTTCCGTACCGCACTGGATTTGTGCTTGAAGATGCCA 60
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 CTGGCTTATCATTGAATGGGGATCTTGATGTGCAATCGGTGTTTGCAGGGACTTTGCCCA 120
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 CTGCACACCCTAGCTTTTCACCTCAGAAACACCTAGAGATGTTGCCTATTTGGCAGGCCC 180
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 CTCCCCTTCCAGACGAACCAATTGAGATTTTCATTGGCATCCTGTCAGCAGGCAACCATT 240
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TTGCTGAACGTATGGCTGTGAGGAAGACATGGATGTCTGCTGCCCAGAAGTCCTCGAATG 300
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TCGTGGCCCGTTTTTTTGTTGCCCTGAACAGCAGAAAAGAAGTCAATGCAGAATTGAAGA 360
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 AAGAGGCAGAGTTTTTTGGGGACATTGTTATTGTGCCATTCATGGACAGCTATGACTTAG 420
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TTGTTCTAAAGACTGTGGCAATATGTGAATATGGGGTGCGTGTTGTTTCCGCTCGATATA 480
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TAATGAAGTGTGATGACGATAATTTTGTTAGACTTGAATCAGTGAAGGATGAACTTAAGA 540
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 AAATACCAAGAGGTAAAAGTCTCTATGTGGGAAACATGAATTATCACCACAAGCCATTGC 600
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 GCACTGGGAAAGTGGGCTGTCACTTATGAAGGAGTGGCCAGAAGAGGATTACCCAACATA 660
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TGCAAATGGTCCTGGCTACGTTATATCTTCTGATATTGCTGCTTCCATTGGGGTCAGAAT 720
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 TTACAGCTCATAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTG 780
consensus_8846#1 ----------TAAATTAAGGCTCTTCAAGATGGAAGATGTGAGCATGGGCATGTGGGTTG 50
**************************************************
consensus_8846#0 AGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAAGTTCTGCCAATTTG 840
consensus_8846#1 AGCGGTTCAATAACACCAGACATGTTCAATATGTTCACAGTATCAGGTTCTGCCAATTTG 110
********************************************* **************
consensus_8846#0 GATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGT 900
consensus_8846#1 GATGCATAGATGATTACTACACTGCACATTACCAGTCACCGAGGCAAATGCTATGTTTGT 170
************************************************************
consensus_8846#0 GGGATAAGCTGCAGTCTGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACT 960
consensus_8846#1 GGGATAAGCTGCAGTCCGGGAAAGCACAATGTTGCAATATGAGATAGCGACAATGAAACT 230
**************** *******************************************
consensus_8846#0 GGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCC 1020
consensus_8846#1 GGCAGCATCGATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCC 290
************************************************************
consensus_8846#0 TGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAA 1080
consensus_8846#1 TGAGCCCAAGATCGAAGGACTGTTTTGCGATGATAAATTAAGTCCTCAGATGACTAACAA 350
************************************************************
consensus_8846#0 ATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACC 1140
consensus_8846#1 ATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTCAGCTAGAAACC 410
************************************************************
consensus_8846#0 AACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATC 1200
consensus_8846#1 AACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATC 470
************************************************************
consensus_8846#0 TGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATT 1260
consensus_8846#1 TGTACATGTGAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATT 530
************************************************************
consensus_8846#0 GTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAAT 1320
consensus_8846#1 GTGGTTGAAAGTCATGAACAACCCATCAGGTACGTAGAACATCTTGGCGTTTTACTCAAT 590
************************************************************
consensus_8846#0 TTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCT 1380
consensus_8846#1 TTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATTTAGTTCTGGCT 650
************************************************************
consensus_8846#0 GCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCCTTCTTGTTTTTAGA 1440
consensus_8846#1 GCAAACATCTTGCATGAGTTCATGGAGTAAAAAAAAAAAAAA------------------ 692
***************************** * *
consensus_8846#0 TTCAGGTTGTATCGCTGCAGCTCGAGTGTTCATACGTATTAATTTGAAATGTACGTACAT 1500
consensus_8846#1 ------------------------------------------------------------
consensus_8846#0 ATAATATTTTTGTCGAGAAATAC 1523
consensus_8846#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||