These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2512 fasta sequence [CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATATGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATTGGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTTTAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACTTCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGAGCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGCCAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTTTCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGTTGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACGACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGAGGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATATGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGAAGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCATAAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAACTCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGTTCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAGCCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATATTCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAACCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACATGGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAAAGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCGAGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTACAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAACATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAGAGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGATCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGCCTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGATGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGGACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGAGGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGATGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGTCCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTTTCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGATTGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATATTATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACAGGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGTCTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT] [+] EMBL AK068629 [CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATATGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATTGGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTTTAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACTTCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGAGCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGCCAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTTTCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGTTGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACGACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGAGGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATATGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGAAGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCATAAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAACTCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGTTCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAGCCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATATTCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAACCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACATGGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAAAGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCGAGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTACAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAACATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAGAGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGATCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGCCTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGATGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGGACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGAGGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGATGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGTCCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTTTCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGATTGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATATTATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACAGGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGTCTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT] consensusID : consensus_887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAAAAAAAAA] [+] EMBL BM420239 [CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_887#0 CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATA 60 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATT 120 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTT 180 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACT 240 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGA 300 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGC 360 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTT 420 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGT 480 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACG 540 consensus_887#1 ------------------------------------------------------------ consensus_887#0 ACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGA 600 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATA 660 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGA 720 consensus_887#1 ------------------------------------------------------------ consensus_887#0 AGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCAT 780 consensus_887#1 ------------------------------------------------------------ consensus_887#0 AAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAAC 840 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGT 900 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAG 960 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATAT 1020 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAA 1080 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACAT 1140 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAA 1200 consensus_887#1 ------------------------------------------------------------ consensus_887#0 AGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCG 1260 consensus_887#1 ------------------------------------------------------------ consensus_887#0 AGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTA 1320 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAA 1380 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAG 1440 consensus_887#1 ------------------------------------------------------------ consensus_887#0 AGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGA 1500 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGC 1560 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGA 1620 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGG 1680 consensus_887#1 ------------------------------------------------------------ consensus_887#0 ACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGA 1740 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGA 1800 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGT 1860 consensus_887#1 ------------------------------------------------------------ consensus_887#0 CCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTT 1920 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGAT 1980 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATAT 2040 consensus_887#1 ------------------------------------------------------------ consensus_887#0 TATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACA 2100 consensus_887#1 ------------------------------------------------------------ consensus_887#0 GGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAA 2160 consensus_887#1 ------------------------CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAA 36 * ** * ********************** consensus_887#0 TTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGG 2220 consensus_887#1 TTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGG 96 ************************************************************ consensus_887#0 AAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGG 2280 consensus_887#1 AAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGG 156 ************************************************************ consensus_887#0 AAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTT 2340 consensus_887#1 AAGTTTCTCCA-TTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTT 215 *********** ************************************************ consensus_887#0 TTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGT 2400 consensus_887#1 TTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGT 275 ************************************************************ consensus_887#0 ATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGT 2460 consensus_887#1 ATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAA 335 ********************************************************* consensus_887#0 CTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT 2512 consensus_887#1 AAAAAAA--------------------------------------------- 342 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||