These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2585 fasta sequence [TCCTGTCTCCTCCAGTCTCCACACACACACGCAATGACTAAGCCTCTTCCCTCCACCATTCTTCTGATCTGCGTTTCAGCCATCGGGATGGTAGCCGCCGACGTCCCCGTGGCTGGACACCCAGGCTGCCAGACGAGGTGCGGGGACGTCGACATCCCGTTCCCCTTCGGCATCGGCGATCACTGCGCAATCCACCATGGCTTCAACATCATCTGCAAGCCTGTCAACGGCACCAAGAGGCCTTTCAAGGGGTCGTTTGAGGTGACGAAAATCTCTGTGCGCGATGCCAAAGCCTGGATGAAGATGCGGATCTCTTGGTAGTGCTATGACTCGGCCTCGAGCAAAATGAAGGAATGGGTGGATTTCCAAAACTTCACCTACATGCCCTTCAGGTTCTCATACGAGGATAACAAGATTTTCATCATCGGTTGCAATACAATGGCCTACATGAGAGGTGTTTCCTATGTCATAGGTTGCTTATCCACATGCTCCGATCAACCAAAAAATGGTTCTTGCTCTGGCGCTGGCTGTTGTTCGGTGGATGTCCCGCCAGACCTGGGTTATCTTGAGGCTTACTTCAATAAAGACTATAACTCCTCAGAAATCAGCTACAGCAGTTGTGGCTACGTGGTAGTGATGGAAAAGGCTGTGTAAGTGAGTGGCTGGACTTCTAGTTTTGAACTATAGCACCACTTACATTCCCTCAACAAACTTCTGGGATGACTACAACGGGACTGTTCCGGCCGTGATGGACTGGATAATTACATGGGAGACATGCGAGGAAGCGAAAACGAACATGAGTTCATATGCTTGTGTTAGCAACAATAGCGAATGCCTCAATTCAACGAATGGGAGAGGTTATCGCTGCAAGTGCTCCAAGGGGTTCGATGGCAATCCTTACGTCAAGGACGGTCTTCTTGGATGCAGAGGTCTCTCTGTCTCTCTCTCTCTCTCCCTCTCTCTATTCAGCAAAGTATACAATAAGAACTTATATTCACGAAAGTTTGCTTTGTTTCAGATATCAATGAATGTCTTGATAACACTACTTATCCATGCGCTGGAATTTGTGAAAATACAATCGGGAGTTACAAATGTTCTTGCCCTCAAGGACAAAATGAGCTGGCTCGGGGTGTCTGTGTTCCAGATCAGAAGATTCAGAAGTCCCAAGCTTGGGTGATGCCTGTTGTAGGGGCAAGTGTTGGATTTGTCATACTTGTGATCATGGCAACTTGTTCGTACTTGATCCGCGAGAGAAGAAAGCTGCAACACATCAAGCAGAAATATTTTAAGCTACACGGTGGTCTACTGCTGTTTCAAGAGATGAATTCAAATGAAAGGAAATCATTTACAATTTTCTCAGAAGCAGAGTTGCAGCATGCTACAAACAAGTTTGAC-AAAAACCAAATTCTTGGCCATGGTGGTCAT-GGCACTGTTTACAAGGGACTTCTCAAGGACAACACTAAAATAGCTGTCAAGAAATGCATGACAATGGATGAGCAACACAAGAAAGAATTTGGTAAAGAAATGCTAATCCTATCCTAAATAAACCACATAAACATTGTTAAACTATTAGGATGTTGCCTTG-AAGTACAAGTTCCTATGCTAGTATAT-GAATTTATCCCAAAT-GGAACGCTATCCAATCTCATCCATGGCAACCATGGCCAACACATTTCTCTAGTTACTCGTCTACGGATCGCCCATGAATCAGCTGAGGCACTAGCCTACCTCCACTCCTACGCTTCACCACCCATCATCCATGGTGATGTCAAGTCCTCCAACATCCTCCTCGATGTTAACTTCATGGCAAAAGTCTCCGACTTTGGTGCTTCCATCTTAGCTCCACTAGACAAGTCACAGCTTGTCACGCTAGTCCAAGGGACTTGGGGTTACCTTGATCCAGAGTATATGCAAACATGT-GAATTAA-CAGATAAGAGTGACGTTTACAGCTTTGGAGTTGTT-CTTCTAGAACTGCT-CACAAGGAAGAACGTTTTCAACCTTGATGCTCCTGGAAATGAGAAAAGTTTGTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACATGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTTGGCAATGTGTGGTGAGGATAGACCATCCATGAAGAAAGTTGCGGAGAAGCTCGATAGGCTGGTTAAGGTAATGCAACACCCATGGACGCAACAAAATCCTGAAGAGTTGGAGAGCTTGCTTGGAGAATCTTCTTACATTATAAGCTCAGGAGCCTCGAGTACAGGAAATTTCAGCATCGAGAAGAAAGTTGTCAAGGACCTAGCATCAGGGCGTTAAGCTGGAATCTCTTTGCTACCCAGCATACATCATATCACCATATCATACCGCGTCATATTGTATCATAGTTTTCACTTACCCTAGAAATTCAGACTCAGTTATGTTCATTATTAAAAAAATTTTGTGTAAAAATAAAAAAATATTGTTTGTGTAAACCTTTAGTCTTTATGGGACTATGTTTCATCATATATGAGAATAAGAAGCAAATCATACGAAGTCAA] [+] EMBL AK111541 [TCCTGTCTCCTCCAGTCTCCACACACACACGCAATGACTAAGCCTCTTCCCTCCACCATTCTTCTGATCTGCGTTTCAGCCATCGGGATGGTAGCCGCCGACGTCCCCGTGGCTGGACACCCAGGCTGCCAGACGAGGTGCGGGGACGTCGACATCCCGTTCCCCTTCGGCATCGGCGATCACTGCGCAATCCACCATGGCTTCAACATCATCTGCAAGCCTGTCAACGGCACCAAGAGGCCTTTCAAGGGGTCGTTTGAGGTGACGAAAATCTCTGTGCGCGATGCCAAAGCCTGGATGAAGATGCGGATCTCTTGGTAGTGCTATGACTCGGCCTCGAGCAAAATGAAGGAATGGGTGGATTTCCAAAACTTCACCTACATGCCCTTCAGGTTCTCATACGAGGATAACAAGATTTTCATCATCGGTTGCAATACAATGGCCTACATGAGAGGTGTTTCCTATGTCATAGGTTGCTTATCCACATGCTCCGATCAACCAAAAAATGGTTCTTGCTCTGGCGCTGGCTGTTGTTCGGTGGATGTCCCGCCAGACCTGGGTTATCTTGAGGCTTACTTCAATAAAGACTATAACTCCTCAGAAATCAGCTACAGCAGTTGTGGCTACGTGGTAGTGATGGAAAAGGCTGTGTAAGTGAGTGGCTGGACTTCTAGTTTTGAACTATAGCACCACTTACATTCCCTCAACAAACTTCTGGGATGACTACAACGGGACTGTTCCGGCCGTGATGGACTGGATAATTACATGGGAGACATGCGAGGAAGCGAAAACGAACATGAGTTCATATGCTTGTGTTAGCAACAATAGCGAATGCCTCAATTCAACGAATGGGAGAGGTTATCGCTGCAAGTGCTCCAAGGGGTTCGATGGCAATCCTTACGTCAAGGACGGTCTTCTTGGATGCAGAGGTCTCTCTGTCTCTCTCTCTCTCTCCCTCTCTCTATTCAGCAAAGTATACAATAAGAACTTATATTCACGAAAGTTTGCTTTGTTTCAGATATCAATGAATGTCTTGATAACACTACTTATCCATGCGCTGGAATTTGTGAAAATACAATCGGGAGTTACAAATGTTCTTGCCCTCAAGGACAAAATGAGCTGGCTCGGGGTGTCTGTGTTCCAGATCAGAAGATTCAGAAGTCCCAAGCTTGGGTGATGCCTGTTGTAGGGGCAAGTGTTGGATTTGTCATACTTGTGATCATGGCAACTTGTTCGTACTTGATCCGCGAGAGAAGAAAGCTGCAACACATCAAGCAGAAATATTTTAAGCTACACGGTGGTCTACTGCTGTTTCAAGAGATGAATTCAAATGAAAGGAAATCATTTACAATTTTCTCAGAAGCAGAGTTGCAGCATGCTACAAACAAGTTTGAC AAAAACCAAATTCTTGGCCATGGTGGTCAT GGCACTGTTTACAAGGGACTTCTCAAGGACAACACTAAAATAGCTGTCAAGAAATGCATGACAATGGATGAGCAACACAAGAAAGAATTTGGTAAAGAAATGCTAATCCTATCCTAAATAAACCACATAAACATTGTTAAACTATTAGGATGTTGCCTTG AAGTACAAGTTCCTATGCTAGTATAT GAATTTATCCCAAAT GGAACGCTATCCAATCTCATCCATGGCAACCATGGCCAACACATTTCTCTAGTTACTCGTCTACGGATCGCCCATGAATCAGCTGAGGCACTAGCCTACCTCCACTCCTACGCTTCACCACCCATCATCCATGGTGATGTCAAGTCCTCCAACATCCTCCTCGATGTTAACTTCATGGCAAAAGTCTCCGACTTTGGTGCTTCCATCTTAGCTCCACTAGACAAGTCACAGCTTGTCACGCTAGTCCAAGGGACTTGGGGTTACCTTGATCCAGAGTATATGCAAACATGT GAATTAA CAGATAAGAGTGACGTTTACAGCTTTGGAGTTGTT CTTCTAGAACTGCT CACAAGGAAGAACGTTTTCAACCTTGATGCTCCTGGAAATGAGAAAAGTTTGTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACATGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTTGGCAATGTGTGGTGAGGATAGACCATCCATGAAGAAAGTTGCGGAGAAGCTCGATAGGCTGGTTAAGGTAATGCAACACCCATGGACGCAACAAAATCCTGAAGAGTTGGAGAGCTTGCTTGGAGAATCTTCTTACATTATAAGCTCAGGAGCCTCGAGTACAGGAAATTTCAGCATCGAGAAGAAAGTTGTCAAGGACCTAGCATCAGGGCGTTAAGCTGGAATCTCTTTGCTACCCAGCATACATCATATCACCATATCATACCGCGTCATATTGTATCATAGTTTTCACTTACCCTAGAAATTCAGACTCAGTTATGTTCATTATTAAAAAAATTTTGTGTAAAAATAAAAAAATATTGTTTGTGTACACCTTTAGTCTTTATGGGACTATGTTTCATCATATATGAGAATAAGAAGCAAATCATACGAAGTCAA] [+] EMBL AU055937 [ GCGCTGGAATTTGTGAAAATACAATCGGGAGTTACAAATGTTCTTGCCCTCAAGGACAAAATGAGCTGGCTCGGGGTGTCTGTGTTCCAGATCAGAAGATTCAGAAGTCCCAAGCTTGGGTGATGCCTGTTGTAGGGGCAAGTGTTGGATTTGTCATACTTGTGATCATGGCAACTTGTTCGTACTTGATCCGCGAGAGAAGAAAGCTGCAACACATCAAGCAGAAATATTTTAAGCTACACGGTGGTCTACTGCTGTTTCAAGAGATGAATTCAAATGAAAGGAAATCATTTACAATTTTCTCAGAAGCAGAGTTGCAGCATGCTACAAACAAGTTTGACAAAAAACCAAATTCTTGGCCATGGTGGTCAT GGCACTGTTTACAAGGGACTTCTCAAGGACAACACTAAAATAGCTGTCAAGAAATGCATGACAATGGATGAGCAACACAAGAAAGAATTTGGTAAAGAAATGCTAATCCTATCCTAAATAAACCACATAAACATTGTTAAACTATTAGGATGTTGCCTTGAAAGTACAAGTTCCTATGCTAGTATATGGNATTTATCCCAAATGGGGACGNTATCCAAACT ] [+] EMBL AU032342 [ AGGGGCAAGTGTTGGATTTGTCATACTTGTGATCATGGCAACTTGTTCGTACTTGATCCGCGAGAGAAGAAAGCTGCAACACATCAAGCAGAAATATTTTAAGCTACACGGTGGTCTACTGCTGTNTCAAGAGATGAATTCAAATGAAAGGAAATCATTTACAATTTTCTCAGAAGCAGAGTTGCAGCATGCTACAAACAAGTNTGAC AAAAACCAAATTCTTGGCCATGGTGGTCATGGGCACTGTTTACAAGGGACTTCTCAAGGACAACACTAAAATAGCTGTTAAGAAATGCATGACAATGGATGAGCCACACAAGANAGAATTTGGTAAAGAAATGCTAATCCTATCCTAAATAAACCACAT AACATTGGTAAACTATTAGGATGTTGCCTT ] [+] EMBL CF294212 [ ttTACGGATCGCCCATGAATCATCTGACGCACTAGCCTACCTCCACTCCTACGCTCCACCACCCATCATCCATGGTGATGTCAAGTCCTCCAACATCCTCCTCGATGTTAACTTCATGGCAAAAGTCTCCGACTTTGGTGCTTCCATCTTAGCTCCACTAGACAAGTCACAGCTTGTCACGCTAGTCCAAGGGACTT GGGTTACCTTGATCCAGAGTATATGCAAACATGT GAATTAA CAGATAAGAGTGACGTTTACAGCTTTGGAGTTGTT CTTCTAGAACTGCT CACAAGGAAGAACGTTTTCAACCTTGATGCTCCTGGAAATGAGAAAAGTTTGTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACATGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTT ] [-] EMBL CF294211 [ ACTTGGGGTTACCTTGATCCAGAGTATATGCAAACATGT GAATTAA CAGATAAGAGTGACGTTTACAGCTTTGGAGTTGTT CTTCTAGAACTGCT CACAAGGAAGAACGTTTTCAACCTTGATGCTCCTGGAAATGAGAAAAGTTTGTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACATGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTTGGCAATGTGTGGTGAGGATAGACCATCCATGAAGAAAGTTGCGGAGAAGCTCGATAGGCTGGTTAAGGTAATGCAACACCCATGGACGCAACAAAATCCTGAAGAGTTGGAGAGCTTGCTTGGAGAATCTTCTTACATTATAAGCTCAGGAGCCTCGAGTACAGGAAATTTCAGCATCGAGAAGAAAGTTGTCAAGGACCTAGCATCAGGGCGTTAAGCTGGAATCTCTTTGCTACCCAGCATACATCATATCACCATATCATACCGCGTCATATTGTATCATAGTTTTCACTTACCCTAGAAATTCAGACTCAGTTATGTTCATTATTAAAAAAATTTTGTGTAAAAATAAAAAAATATTGTTTGTGTAAA ] [+] EMBL AU032343 [ ttTATGNCAACCTGTGGATTTAACCAGATAAGAGTGACGTTTACAGCTTTGGAGTTGTTCCTTCTAGAACTGCTCCCCAAGGAAGAACGTTTTCAACCTTGATGCTCCTGGAAATGAGAAAAGTTTGTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACATGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTTGGCAATGTGTGGTGAGGATAGACCATCC TGAAGAAAGTTGCGGAGAAGCTCGATAGGCTGGTTAAGGTAATGCAACACCCATGGACGCAACAAAATCCTGAAGAGTTGGAGAGCTTGCTTGGAGAATCTTCTTACATTATAAGCTCAGGAGCCTCGAGTACAGGAAATTTCAGCATCGAGAAGAAAGTTGTCAAGGACCTAGCATCAGGGCGTTAAGCTGGAATCTCTTTGCTACCCAGCATACATCATATCACCATATCATACCGCGTCATATTGTATCATAGTTTTCACTTACCCTAGAAATTCAGACTCAGTTATGTTCATTATTAAANAAATTTTGTNTAAAAATANAANAATATTGTTTGTGTTAAaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||