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Oryza sativa
cluster # 8904 cluster # 8904       Sequences # 6       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8904#0 length = 1837 sequences # 2  
consensus_8904#1 length = 954 sequences # 1  
 consensus_8904#2 length = 647 sequences # 1  
consensus_8904#3 length = 491 sequences # 2  
consensusID : consensus_8904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1837
fasta sequence 
                              [TAAGCTTGAGCTTTACTTAGTTCCACAAAAAAAAAAACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTCAGCGGTGTCGTCTTTGAAGTAGGACCTATGAAATACGTGTTGGAGCCTTATAATGGTAGTTTGCCACGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATCCTCTTCTTGGACACTCCTGTTGGTTCTGGTTTCTCATACGCTCATGATCCTAAAGGTTATAATGTCGGGGACATATCATCGTCTTTGCAAGTCGTAACATTTCTGAAGAAGTGGTTCAATGATCACCCACGCTATCTCTCAAATCATTTCTATGTTGGAGGAAGCTCATACGCTGGAAAGGTGATTCCAATTATCATGAAGTTCATTTCAGAAGGAATTGAACAAAGGCAGCAGCCATTGGTTAATCTTAAGTTACAGGGGTATATAGTTGGCAACCCCATTACAGGCTCGAAGATTGATGATAATTTCAAAATTCCATATTCTCATGGTGTTGGGATCATATCTGATCAATTATACGAGGCTGCAGTAGCAAACTGCAATGGAGATTATGTGACCACAACAAATGAATTATGTGCTAAGGCCCTAAATGCTATTGATAATCTCATGTCTGAAGTTGATTATGGAAATATCTTGGATGATAAATGTGTTCGTGCTACACCAAAACCCATAAATGAAGTTTCAAGAAGTAGGAGTCTGCAAGAAGATTACATTCGGCTAAGTGAGCCGACTGTTCGACCTACTATCAATTGTTTTTCATACCGTTACTATCTATCATTCTTGTGGATGAACAACAATTTGACTAGAGAAGCTCTTAAGATCAAGAAGGGAACAGTCGGCGAATGGATAAGATGTAAGACAGGGCTACCCTATGTTCAAGATGTCGCAAGCAGCATCAAGTATCATTTTGACCTCACCACAGGAGGTTACCGGGCACTTGTGTTCAGGTGAAATCATCAGAGGAAAATTCATTTATCTGCTTCCTGCAGGCATGGATAAGATCCTTGAACTTCTCCATAGTTGATGAGTGGAGAGCATGGCATGTGGATGGCCAGGCTGCAGGATTTACAATTTTGTACGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTGGCCATACCTCTATAGAAACCAATCCTAAACAAGGTTTTGCCATGGGCAAACGTTGGCTAGATAATAAGCCTCTGTGATGTTCACCTGCTTTGACCCAACCTGTATACTCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTATCTCCCATGTTTTCCAACAACGAATAGAAGACAAGATAAATACTCCGCCAAATAGAGGGTCCAGTACTGACCAAATTGAAAAATGGAGAGAAAAAAAATCCTGATCAGTTGTAGAAGTACTAGCTCGGGTTGCTACTACAACTTTGGGATGCAAAATGCAAATGCACCCGGTCAAACCACTTTGACCACACGAGGTTTTTACCCACTAAAAAAAAAA]

[+] EMBL AK067912             [TAAGCTTGAGCTTTACTTAGTTCCACAAAAAAAAAAACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTCAGCGGTGTCGTCTTTGAAGTAGGACCTATGAAATACGTGTTGGAGCCTTATAATGGTAGTTTGCCACGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATCCTCTTCTTGGACACTCCTGTTGGTTCTGGTTTCTCATACGCTCATGATCCTAAAGGTTATAATGTCGGGGACATATCATCGTCTTTGCAAGTCGTAACATTTCTGAAGAAGTGGTTCAATGATCACCCACGCTATCTCTCAAATCATTTCTATGTTGGAGGAAGCTCATACGCTGGAAAGGTGATTCCAATTATCATGAAGTTCATTTCAGAAGGAATTGAACAAAGGCAGCAGCCATTGGTTAATCTTAAGTTACAGGGGTATATAGTTGGCAACCCCATTACAGGCTCGAAGATTGATGATAATTTCAAAATTCCATATTCTCATGGTGTTGGGATCATATCTGATCAATTATACGAGGCTGCAGTAGCAAACTGCAATGGAGATTATGTGACCACAACAAATGAATTATGTGCTAAGGCCCTAAATGCTATTGATAATCTCATGTCTGAAGTTGATTATGGAAATATCTTGGATGATAAATGTGTTCGTGCTACACCAAAACCCATAAATGAAGTTTCAAGAAGTAGGAGTCTGCAAGAAGATTACATTCGGCTAAGTGAGCCGACTGTTCGACCTACTATCAATTGTTTTTCATACCGTTACTATCTATCATTCTTGTGGATGAACAACAATTTGACTAGAGAAGCTCTTAAGATCAAGAAGGGAACAGTCGGCGAATGGATAAGATGTAAGACAGGGCTACCCTATGTTCAAGATGTCGCAAGCAGCATCAAGTATCATTTTGACCTCACCACAGGAGGTTACCGGGCACTTGTGTTCAGGTGAAATCATCAGAGGAAAATTCATTTATCTGCTTCCTGCAGGCATGGATAAGATCCTTGAACTTCTCCATAGTTGATGAGTGGAGAGCATGGCATGTGGATGGCCAGGCTGCAGGATTTACAATTTTGTACGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTGGCCATACCTCTATAGAAACCAATCCTAAACAAGGTTTTGCCATGGGCAAACGTTGGCTAGATAATAAGCCTCTGTGATGTTCACCTGCTTTGACCCAACCTGTATACTCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTATCTCCCATGTTTTCCAACAACGAATAGAAGACAAGATA                                                                                                                                                                                   ]
[+] EMBL AU058085             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   aAAGCCTCTGTGATGTTCACCTGCTTTGACCCAACCTGTATACCCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTATCTCCCATGTTTTCCAACAACGAATAGAAGACAAGATAAATACTCCGCCAAATAGAGGGTCCAGTACTGACCAAATTGAAAAATGGAGAGAAAAAAAATCCTGATCAGTTGTAGAAGTACTAGCTCGGGTTGCTACTACAACTTTGGGATGCAAAATGCAAATGCACCCGGTCAAACCACTTTGACCACACGAGGTTTTTACCCACTAAAAAAAAAA]




>consensus_8904#0
TAAGCTTGAGCTTTACTTAGTTCCACAAAAAAAAAAACTGTTGACAAAAAAAACTCAGAT
CTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAAGCAATGGTCTTGGAGCTTCTCACAA
TGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCG
TCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCC
ACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGG
ACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTA
CAGGCCCTGTGATCCTCTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTCAGCGGTGTCG
TCTTTGAAGTAGGACCTATGAAATACGTGTTGGAGCCTTATAATGGTAGTTTGCCACGAT
TGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATCCTCTTCTTGGACACTCCTG
TTGGTTCTGGTTTCTCATACGCTCATGATCCTAAAGGTTATAATGTCGGGGACATATCAT
CGTCTTTGCAAGTCGTAACATTTCTGAAGAAGTGGTTCAATGATCACCCACGCTATCTCT
CAAATCATTTCTATGTTGGAGGAAGCTCATACGCTGGAAAGGTGATTCCAATTATCATGA
AGTTCATTTCAGAAGGAATTGAACAAAGGCAGCAGCCATTGGTTAATCTTAAGTTACAGG
GGTATATAGTTGGCAACCCCATTACAGGCTCGAAGATTGATGATAATTTCAAAATTCCAT
ATTCTCATGGTGTTGGGATCATATCTGATCAATTATACGAGGCTGCAGTAGCAAACTGCA
ATGGAGATTATGTGACCACAACAAATGAATTATGTGCTAAGGCCCTAAATGCTATTGATA
ATCTCATGTCTGAAGTTGATTATGGAAATATCTTGGATGATAAATGTGTTCGTGCTACAC
CAAAACCCATAAATGAAGTTTCAAGAAGTAGGAGTCTGCAAGAAGATTACATTCGGCTAA
GTGAGCCGACTGTTCGACCTACTATCAATTGTTTTTCATACCGTTACTATCTATCATTCT
TGTGGATGAACAACAATTTGACTAGAGAAGCTCTTAAGATCAAGAAGGGAACAGTCGGCG
AATGGATAAGATGTAAGACAGGGCTACCCTATGTTCAAGATGTCGCAAGCAGCATCAAGT
ATCATTTTGACCTCACCACAGGAGGTTACCGGGCACTTGTGTTCAGGTGAAATCATCAGA
GGAAAATTCATTTATCTGCTTCCTGCAGGCATGGATAAGATCCTTGAACTTCTCCATAGT
TGATGAGTGGAGAGCATGGCATGTGGATGGCCAGGCTGCAGGATTTACAATTTTGTACGC
CAACAACTTGACCTTTGCCACAGTAAAGGGTGGTGGCCATACCTCTATAGAAACCAATCC
TAAACAAGGTTTTGCCATGGGCAAACGTTGGCTAGATAATAAGCCTCTGTGATGTTCACC
TGCTTTGACCCAACCTGTATACTCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTA
TCTCCCATGTTTTCCAACAACGAATAGAAGACAAGATAAATACTCCGCCAAATAGAGGGT
CCAGTACTGACCAAATTGAAAAATGGAGAGAAAAAAAATCCTGATCAGTTGTAGAAGTAC
TAGCTCGGGTTGCTACTACAACTTTGGGATGCAAAATGCAAATGCACCCGGTCAAACCAC
TTTGACCACACGAGGTTTTTACCCACTAAAAAAAAAA

consensusID : consensus_8904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 954
fasta sequence 
                              [CTTGTGAGATTCAACCTACCACTACCTAGACACCTTCACACTACACCACCAACCATGTCACGCCATTAACTCTATCTCTCCGCTCACCACCTCAAAATCACCACTAGCTCTCCATCGCCTCCCCACAAACCCCACGCCACGCCCTCCAGCCCCCGCCCCGAGTGCACCCCACTAGCGGCGCCAACACCGCGAAGACGACGCCACCGCCACCGGGCCCCCCCCAGCCCAAAACTACCGGCGTGCACGACACACTGGCACTACGCTTGGATTAGGGCACAAAAATAACACCACTACACCCCCAAGCCCCCATGGAAAACAGCCTGCGCTTCCTCAGTTCCCCCAAAAAAAAAACTGTTGACCAAAAAACCTAGATTTCGAGCTGCCGGAGCTCTGAAAAAGGAAGCAAAGCGATGGTCTGGGAGCTTCTCACAAAGGCTGCTCCCCGCGGGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACATGAGTCCTCTCCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTAAGGGGCTCCCTGTATGTTTTCTTTTCTCCAGCTGTTACATATGACTTTTAATCGAAGGGAAATTGGAAACTCAAACGCAAAAGGGAATCGAATCCCAGGGGAATTAGGCCATCCACAATGGGTGCCCCCAGGTCGTGCCCCTAGCGACGGCGGCAAACTTTTCCGTCCGCGCCGTCCCCCCGCGATGGAGCGCGTCCCTCTGCTAAAGGACGCGGCTCTCTCCGCTCCCCGCCAGCTTTTCGTGGGGAGCTGCAGCCAGGCGACGCGTTGGGGGGCTTCGGCGCTTGTGGACACGGTTTCCTCGCTTGCGATTTCCCCTTCTACCCTCGACCTCGTCGCTGGGAGGAGGCCGA]

[-] EMBL BE039796             [CTTGTGAGATTCAACCTACCACTACCTAGACACCTTCACACTACACCACCAACCATGTCACGCCATTAACTCTATCTCTCCGCTCACCACCTCAAAATCACCACTAGCTCTCCATCGCCTCCCCACAAACCCCACGCCACGCCCTCCAGCCCCCGCCCCGAGTGCACCCCACTAGCGGCGCCAACACCGCGAAGACGACGCCACCGCCACCGGGCCCCCCCCAGCCCAAAACTACCGGCGTGCACGACACACTGGCACTACGCTTGGATTAGGGCACAAAAATAACACCACTACACCCCCAAGCCCCCATGGAAAACAGCCTGCGCTTCCTCAGTTCCCCCAAAAAAAAAACTGTTGACCAAAAAACCTAGATTTCGAGCTGCCGGAGCTCTGAAAAAGGAAGCAAAGCGATGGTCTGGGAGCTTCTCACAAAGGCTGCTCCCCGCGGGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACATGAGTCCTCTCCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTAAGGGGCTCCCTGTATGTTTTCTTTTCTCCAGCTGTTACATATGACTTTTAATCGAAGGGAAATTGGAAACTCAAACGCAAAAGGGAATCGAATCCCAGGGGAATTAGGCCATCCACAATGGGTGCCCCCAGGTCGTGCCCCTAGCGACGGCGGCAAACTTTTCCGTCCGCGCCGTCCCCCCGCGATGGAGCGCGTCCCTCTGCTAAAGGACGCGGCTCTCTCCGCTCCCCGCCAGCTTTTCGTGGGGAGCTGCAGCCAGGCGACGCGTTGGGGGGCTTCGGCGCTTGTGGACACGGTTTCCTCGCTTGCGATTTCCCCTTCTACCCTCGACCTCGTCGCTGGGAGGAGGCCGA]




>consensus_8904#1
CTTGTGAGATTCAACCTACCACTACCTAGACACCTTCACACTACACCACCAACCATGTCA
CGCCATTAACTCTATCTCTCCGCTCACCACCTCAAAATCACCACTAGCTCTCCATCGCCT
CCCCACAAACCCCACGCCACGCCCTCCAGCCCCCGCCCCGAGTGCACCCCACTAGCGGCG
CCAACACCGCGAAGACGACGCCACCGCCACCGGGCCCCCCCCAGCCCAAAACTACCGGCG
TGCACGACACACTGGCACTACGCTTGGATTAGGGCACAAAAATAACACCACTACACCCCC
AAGCCCCCATGGAAAACAGCCTGCGCTTCCTCAGTTCCCCCAAAAAAAAAACTGTTGACC
AAAAAACCTAGATTTCGAGCTGCCGGAGCTCTGAAAAAGGAAGCAAAGCGATGGTCTGGG
AGCTTCTCACAAAGGCTGCTCCCCGCGGGGGGCGATGCATGCTCCTGCAACCACCGCGCC
TCGCCACATGAGTCCTCTCCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGT
CGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGT
AAGGGGCTCCCTGTATGTTTTCTTTTCTCCAGCTGTTACATATGACTTTTAATCGAAGGG
AAATTGGAAACTCAAACGCAAAAGGGAATCGAATCCCAGGGGAATTAGGCCATCCACAAT
GGGTGCCCCCAGGTCGTGCCCCTAGCGACGGCGGCAAACTTTTCCGTCCGCGCCGTCCCC
CCGCGATGGAGCGCGTCCCTCTGCTAAAGGACGCGGCTCTCTCCGCTCCCCGCCAGCTTT
TCGTGGGGAGCTGCAGCCAGGCGACGCGTTGGGGGGCTTCGGCGCTTGTGGACACGGTTT
CCTCGCTTGCGATTTCCCCTTCTACCCTCGACCTCGTCGCTGGGAGGAGGCCGA

consensusID : consensus_8904#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence 
                              [TAGAATTTATACATAAACTATATAGGTATAGAGTTTATAGGTATACATGTAAAGTTATAAAGTTTGCATGTATAGGGTAGAAAAAATATATATTTGGTGGGTCCGAAACTGATAGCCGGTGCCACCCTGCTAACGACTGATTGCTAATTAGCGATTCGAAATGGTTTGGATTAAGTAATTACCTTATTATAGTGTATAGCAATTCTAATATTTTAAGTTATTTCTCGGTTCCTAATATTAAAAAAACGTATTTACCCGTTACAATGCACGGATATTTTTTCTAGCTGGACCTTAATTGAGAAATAACCTTGCAGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTTTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTAAGCGGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTAATACTATTCTCATGTTGGCTCAATCGAATATAAATTATGCATGATTTTTTTGAGTTAATAAATTATGCATGATTATATATAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA759139             [TAGAATTTATACATAAACTATATAGGTATAGAGTTTATAGGTATACATGTAAAGTTATAAAGTTTGCATGTATAGGGTAGAAAAAATATATATTTGGTGGGTCCGAAACTGATAGCCGGTGCCACCCTGCTAACGACTGATTGCTAATTAGCGATTCGAAATGGTTTGGATTAAGTAATTACCTTATTATAGTGTATAGCAATTCTAATATTTTAAGTTATTTCTCGGTTCCTAATATTAAAAAAACGTATTTACCCGTTACAATGCACGGATATTTTTTCTAGCTGGACCTTAATTGAGAAATAACCTTGCAGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTTTGGTTGACAGGCGGGCCTGGCTGCTCCGGATTAAGCGGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTAATACTATTCTCATGTTGGCTCAATCGAATATAAATTATGCATGATTTTTTTGAGTTAATAAATTATGCATGATTATATATAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8904#2
TAGAATTTATACATAAACTATATAGGTATAGAGTTTATAGGTATACATGTAAAGTTATAA
AGTTTGCATGTATAGGGTAGAAAAAATATATATTTGGTGGGTCCGAAACTGATAGCCGGT
GCCACCCTGCTAACGACTGATTGCTAATTAGCGATTCGAAATGGTTTGGATTAAGTAATT
ACCTTATTATAGTGTATAGCAATTCTAATATTTTAAGTTATTTCTCGGTTCCTAATATTA
AAAAAACGTATTTACCCGTTACAATGCACGGATATTTTTTCTAGCTGGACCTTAATTGAG
AAATAACCTTGCAGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTAC
TTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTTTGGTTGACAGGCGGG
CCTGGCTGCTCCGGATTAAGCGGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGA
TTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGG
TTAATACTATTCTCATGTTGGCTCAATCGAATATAAATTATGCATGATTTTTTTGAGTTA
ATAAATTATGCATGATTATATATAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8904#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence 
                              [AACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTAC-TACTTCGTTGAATCGGAGAGGAGCCCAAGTAC-AGG-CCCTGT-GATCCTCT-GGTTGAC-AGGC-GGGCCT-GGCTGCTCCGGATTCAGC-GGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTAATACTATTCTC]

[+] EMBL AK104942             [AACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTAC TACTTCGTTGAATCGGAGAGGAGCCCAAGTAC AGG CCCTGT GATCCTCT GGTTGAC AGGC GGGCCT GGCTGCTCCGGATTCAGC GGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTAATACTATTCTC]
[+] EMBL AU161513             [                                                                           CTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTTACTTCGTTGAATCGGAGAGGTGCCCAAGTACAAGGNCCTTGTNNATCCCCTGGGTTGACAAGGCGGGGCCTGGGCTNCTNCGGATTNAACGGGTGTCGNCTTT                                                                                                     ]




>consensus_8904#3
AACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAGGAAGCAAA
GCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCATGCTCCTG
CAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTGCTGCCGTGC
TCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTTCCAC
CTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTCTTCTACTACTTC
GTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGGTTGACAGGCGGGCCT
GGCTGCTCCGGATTCAGCGGTGTCGTCTTTGAAGTAGGTTAGTAGTAGTGATTGGGATTT
GATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTATGCTTTCATTGCTCTAAGGTTA
ATACTATTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8904#0      ------------------------------TAAGCTTGAGCTTTACTTAGTTCCACAAAA 30
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      -----------------------------------------------------CTTGTGA 7
consensus_8904#2      TAGAATTTATACATAAACTATATAGGTATAGAGTTTATAGGTATACATGTAAAGTTATAA 60
                                                                                  

consensus_8904#0      AAAAAA---ACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAG 87
consensus_8904#3      -----A---ACTGTTGACAAAAAAAACTCAGATCTTCAAGCTGCCAGAGCACTGAAAAAG 52
consensus_8904#1      GATTCA---ACCTACCACTACCTAGAC----ACCTTCACACTAC---ACCACCAACCATG 57
consensus_8904#2      AGTTTGCATGTATAGGGTAGAAAAAATATATATTTGGTGGGTCCGAAACTGATAGCCGGT 120
                                             * *     *  *      * *   *            

consensus_8904#0      GAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCA 147
consensus_8904#3      GAAGCAAAGCAATGGTCTTGGAGCTTCTCACAATGGCTGCTCACCGCGTGGGGCGATGCA 112
consensus_8904#1      T---CACGCCATTAACTCTATCTCTCCGCTCACCACCTCAAAATCACCACTAGCTCTCCA 114
consensus_8904#2      G--CCACCCTGCTAACGACTGATTGCTAATTAGCGATTCGAAATGGTTTGGATTAAGTAA 178
                          **      *                  *     *    *                *

consensus_8904#0      T-GCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTG 206
consensus_8904#3      T-GCTCCTGCAACCACCGCGCCTCGCCACCTGCGTCCTCTTCCTCCTGCTACCGCTGCTG 171
consensus_8904#1      TCGCCTCCCCACAAACCCCACGCCACGCCCTCCAGCCCCCGCCCCGAGTGCACCCCACTA 174
consensus_8904#2      TTACCTTATTATA----GTGTATAGCAATTCTAATATTTTAAGTTATTTCTCGGTTCCTA 234
                      *  *      *              *                               ** 

consensus_8904#0      CTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCC---GC 263
consensus_8904#3      CTGCCGTGCTCGGCGTCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCC---GC 228
consensus_8904#1      GCGGCGCCAACACCG-CGAAGACGACG--CCACCGCCACCGGGCCCCCCCCAGCCCAAAA 231
consensus_8904#2      ATATTAAAAAAACGTATTTACCCGTTA---CAATGCACGGATATTTTTTCTAGCTGGACC 291
                                            **           *                **      

consensus_8904#0      TTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTC 323
consensus_8904#3      TTGCCGTTCCACCTTGAGACCGGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTC 288
consensus_8904#1      CTACCGGCGTGCACGACACACTGGCAC-TACGCTTGGATTAGGGCACAAAAATAACACCA 290
consensus_8904#2      TTAATTGAGAAATAACCTTGCAGGTATGTTGGTGTGGACGAGGAGACGGGCACTGAGCTC 351
                       *                  * ** *  *  *  ****  ***  **    *     *  

consensus_8904#0      TTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGGTTG 383
consensus_8904#3      TTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTCTGGTTG 348
consensus_8904#1      CTACACCCCCAAGCCCCCATGGAAAACAGCC----TGCGCTTCCTCAGTTCCCCCAAAAA 346
consensus_8904#2      TTCTACTACTTCGTTGAATCGGAGAGGAGCCCAAGTACAGGCCCTGTGATCCTTTGGTTG 411
                       *  **  *   *       *** *  ****    * *    ***  * ***        

consensus_8904#0      ACAGGCGG--GCCTGGCTGCTCCGGATTCAGCGGTGTCGT--CTTTGAAGTAGGACCTAT 439
consensus_8904#3      ACAGGCGG--GCCTGGCTGCTCCGGATTCAGCGGTGTCGT--CTTTGAAGTAGG---TTA 401
consensus_8904#1      AAAAACTGTTGACCAAAAAACCTAGATTTCGAGCTGCCGGAGCTCTGAAAAAGGAAGCAA 406
consensus_8904#2      ACAGGCGG--GCCTGGCTGCTCCGGATTAAGCGGTGTCGT--CTTTGAAGTAGG---TTA 464
                      * *  * *  * *        *  ****  * * ** **   ** ****  ***      

consensus_8904#0      GAAATACGTGTTGGAGC--CTTATAATGGTA----GTTTGCCACGATTGGTTTATAATC- 492
consensus_8904#3      GTAGTAGTGATTGGGAT--TTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTA- 458
consensus_8904#1      AGCGATGGTCTGGGAGCTTCTCACAAAGGCTGCT-CCCCGCGGGGGGCGATGCATGCTCC 465
consensus_8904#2      GTAGTAGTGATTGGGAT--TTGATGATGAGAAAAAGATTTGTAGAACTGACAGAGACTA- 521
                                * **      * *  * *                    *    *   *  

consensus_8904#0      AGTATTCATGGACACAGATGGCAAGCATCCTCTTCTTGGACACTCCTGTTGGTTCTGGTT 552
consensus_8904#3      TGCTTTCATTGCTCTAA--GGTTAATACTATTCTC------------------------- 491
consensus_8904#1      TGCAACCACCGCGCCTCGCCACATGAGTCCTCTCCCTCC-TGCTACCGCTGCTGCTGCCG 524
consensus_8904#2      TGCTTTCATTGCTCTAA-----------------GGTTAATACTATTCTCATGTTGGCTC 564
                       *    **  *                                                 

consensus_8904#0      TCTCATACGCTCATGATCCTAAAGGTTATAATGTCGGGGACATATCATCGTCTTTGCAAG 612
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      TGCTCGGCG-TCGTCGTCGGTGATCACCCACCTCCCGGGCTTCCACGGCCGCTTGCCGTT 583
consensus_8904#2      AATCGAATATAAATTATGCATGATTTTTTTGAGTTAATAAATTATGCATGATTATATATA 624
                                                                                  

consensus_8904#0      TCGTAACATTTCTGAAGAAGTGGTTCAATGATCACCCACGCTATCTCTCAAATCATTTCT 672
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      CCACCTTGAGACCGGGTAAGGGGCTCCCTG------TATGTTTTCTTTTCTCCAGCTGTT 637
consensus_8904#2      AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 647
                                                                                  

consensus_8904#0      ATGTTGGAGGAAGCTCATACGCTGGAAAGGTG---ATTCCAAT-TATCATGAAGTTCATT 728
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ACAT---ATGACTTTTAATCGAAGGGAAATTGGAAACTCAAACGCAAAAGGGAATCGAAT 694
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TCAGAAGGAATTGAACAAAGGCAGCAGCCATTGGTTAATCTTAAGTTACAGGGGTATATA 788
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      CCCAGGGGAATT------AGGCCATCCACAATGGGTGCCCCCAGGTCGTGCCCCTAGCGA 748
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      -GTTGGCAACCCCATTACAGGCTCGAAGATTGATGATAATTTCAAAATTCCATATTCTCA 847
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      CGGCGGCAAACTT-TTCCGTCCGCGCCGTCCCCCCGCGATGGAGCGCGTCCCTCTGCTAA 807
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TGGTGTTGGGATCATATCTGATCAATTATACGAGGCTGCAGTAGCAAACTGCAATGGAGA 907
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      AGG--ACGCGGCTCTCTCCGCTC---CCCGCCAGCTTTTCGTGGGGAGCTGCAGCC-AGG 861
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TTATGTGACCACAACAAATGAATTATGTGCTAAGG----CCCTAAATGCTATTGATAATC 963
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      CGACGCGTTGGGGGGCTTCGGCGCTTGTGGACACGGTTTCCTCGCTTGCGATTTCCCCTT 921
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TCATGTCTGAAGTTGATTATGGAAATATCTTGGATGATAAATGTGTTCGTGCTACACCAA 1023
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      CTACCCTCGACCTCGTCGCTGGGAGGAGGCCGA--------------------------- 954
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      AACCCATAAATGAAGTTTCAAGAAGTAGGAGTCTGCAAGAAGATTACATTCGGCTAAGTG 1083
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      AGCCGACTGTTCGACCTACTATCAATTGTTTTTCATACCGTTACTATCTATCATTCTTGT 1143
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      GGATGAACAACAATTTGACTAGAGAAGCTCTTAAGATCAAGAAGGGAACAGTCGGCGAAT 1203
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      GGATAAGATGTAAGACAGGGCTACCCTATGTTCAAGATGTCGCAAGCAGCATCAAGTATC 1263
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      ATTTTGACCTCACCACAGGAGGTTACCGGGCACTTGTGTTCAGGTGAAATCATCAGAGGA 1323
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      AAATTCATTTATCTGCTTCCTGCAGGCATGGATAAGATCCTTGAACTTCTCCATAGTTGA 1383
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TGAGTGGAGAGCATGGCATGTGGATGGCCAGGCTGCAGGATTTACAATTTTGTACGCCAA 1443
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      CAACTTGACCTTTGCCACAGTAAAGGGTGGTGGCCATACCTCTATAGAAACCAATCCTAA 1503
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      ACAAGGTTTTGCCATGGGCAAACGTTGGCTAGATAATAAGCCTCTGTGATGTTCACCTGC 1563
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      TTTGACCCAACCTGTATACTCGTGCAACTGGTATTGTTTGTATGAAGAACTACTTTATCT 1623
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      CCCATGTTTTCCAACAACGAATAGAAGACAAGATAAATACTCCGCCAAATAGAGGGTCCA 1683
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      GTACTGACCAAATTGAAAAATGGAGAGAAAAAAAATCCTGATCAGTTGTAGAAGTACTAG 1743
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      CTCGGGTTGCTACTACAACTTTGGGATGCAAAATGCAAATGCACCCGGTCAAACCACTTT 1803
consensus_8904#3      ------------------------------------------------------------
consensus_8904#1      ------------------------------------------------------------
consensus_8904#2      ------------------------------------------------------------
                                                                                  

consensus_8904#0      GACCACACGAGGTTTTTACCCACTAAAAAAAAAA 1837
consensus_8904#3      ----------------------------------
consensus_8904#1      ----------------------------------
consensus_8904#2      ----------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)