cluster # 891

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Oryza sativa
cluster # 891 cluster # 891 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_891#0 length = 305 sequences # 1

consensus_891#1 length = 233 sequences # 1

consensusID : consensus_891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [NATCCACATCNTTNCGAGATGCGAGTATGCGCAATCGCGAGCTCAGGAGNATGTGGCNGTNCGNACATATGCACACTGAATAGGGTAGCCTCGACATCATTCATCTCATAGGCGCNATCGACAGACAGTCCTGGGACGGATTCCGGATACCGCCTAGAGACCTAGACAGTGGTGTCAGGACGTAACTATTCGCTCTTAGCTCTCCAGCTTGTTCACCAGCCTGAAATCGTTGCTGGTGTACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAATTAGGATT]

[+] EMBL AA751793             [NATCCACATCNTTNCGAGATGCGAGTATGCGCAATCGCGAGCTCAGGAGNATGTGGCNGTNCGNACATATGCACACTGAATAGGGTAGCCTCGACATCATTCATCTCATAGGCGCNATCGACAGACAGTCCTGGGACGGATTCCGGATACCGCCTAGAGACCTAGACAGTGGTGTCAGGACGTAACTATTCGCTCTTAGCTCTCCAGCTTGTTCACCAGCCTGAAATCGTTGCTGGTGTACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAATTAGGATT]




>consensus_891#0
NATCCACATCNTTNCGAGATGCGAGTATGCGCAATCGCGAGCTCAGGAGNATGTGGCNGT
NCGNACATATGCACACTGAATAGGGTAGCCTCGACATCATTCATCTCATAGGCGCNATCG
ACAGACAGTCCTGGGACGGATTCCGGATACCGCCTAGAGACCTAGACAGTGGTGTCAGGA
CGTAACTATTCGCTCTTAGCTCTCCAGCTTGTTCACCAGCCTGAAATCGTTGCTGGTGTA
CTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAATTA
GGATT

consensusID : consensus_891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [GCCTCAGAGCTTTGACCAATGAAGCCTGTTGAAGCTAGATCCCCGAACTGGACATGTGTAGACGAACTATTGGCTGCTGTGAGCTTGCCAGCGTTGGTTCACCGCCTGGAAATCGTTGCTGGTGTACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAATTAGGATTTCGTTATCTCCACTCCATGGTTTCTATTAACCAATAAAAAAA]

[+] EMBL BI813772             [GCCTCAGAGCTTTGACCAATGAAGCCTGTTGAAGCTAGATCCCCGAACTGGACATGTGTAGACGAACTATTGGCTGCTGTGAGCTTGCCAGCGTTGGTTCACCGCCTGGAAATCGTTGCTGGTGTACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAATTAGGATTTCGTTATCTCCACTCCATGGTTTCTATTAACCAATAAAAAAA]




>consensus_891#1
GCCTCAGAGCTTTGACCAATGAAGCCTGTTGAAGCTAGATCCCCGAACTGGACATGTGTA
GACGAACTATTGGCTGCTGTGAGCTTGCCAGCGTTGGTTCACCGCCTGGAAATCGTTGCT
GGTGTACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTT
AAATTAGGATTTCGTTATCTCCACTCCATGGTTTCTATTAACCAATAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_891#0      NATCCACATCNTTNCGAGATGCGAGTATGCGCAATCGCGAGCTCAGGAGNATGTGGCNGT 60
consensus_891#1      ------------------------------------------------------------
                                                                                 

consensus_891#0      NCGNACATATGCACACTGAATAGGGTAGCCTCGACATCATTCATCTCATAGGCGCNATCG 120
consensus_891#1      ------------------------------------------GCCTCAGAGCTTTGACCA 18
                                                                 **** **     * * 

consensus_891#0      ACAGACAGTCCTGGGACGGATTCCGGATACCGCCTAGAGACCTAGACAGTGGTGTCAGGA 180
consensus_891#1      ATGAAGCCTGTTGAAGCTAGATCC-----CCG-------AACTGGACAT--GTGTAGACG 64
                     *   *   *  **   *    ***     ***       * ** ****   ****     

consensus_891#0      CGTAACTATTCGCTCTTAGCTCTCCAGCTT--GTTCACCAGCCTGAAATCGTTGCTGGTG 238
consensus_891#1      AACTATTGGCTGCTGTGAGCTTGCCAGCGTTGGTTCACCGCCTGGAAATCGTTGCTGGTG 124
                         * *    *** * ****  ***** *  *******  *  ****************

consensus_891#0      TACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAAT 298
consensus_891#1      TACTACAGCATGGAATGTGTTAAATGGAGCTTGGAAGATTGTTTTTTTATAAACTTAAAT 184
                     ************************************************************

consensus_891#0      TAGGATT------------------------------------------ 305
consensus_891#1      TAGGATTTCGTTATCTCCACTCCATGGTTTCTATTAACCAATAAAAAAA 233
                     *******