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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1405 fasta sequence
[CAAGAACGCCAAAAACCCTCGCTTTGCTGCTGCTCCTCCCCCTTCTCCTTCGGCTGCTGATCGGATTCGCGGCGTCCCAGGCTAGGGATCCGGGCGGTGGCGGCGATGGGCGGCGGCGGCGGCGCGGAGGAGGAGCTGACGGCGCAGGAGACGGCGCTCTACGACCGCCAGATCCGCGTCTGGGGCGTTGACGCCCAGAAGAGGCTAAGTAAAGCTCATGTGCTCGTGTGCGGCATGAATGGTACTACTACTGAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTGATGGATGATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGATGAGAGCATATATGGTGGTAGATCACGAGCTGAGGTTTGCTGTGAGTCCCTGAAAGATTTCAATCCAATGGTCCGAGTTGCAGTCGAAAAGGGTGATCCATCATTAATTGATGGAGAATTCCTTGACAAGTTTGACATAATTGTAGTTAGCTGTGCGCCTATTAAAACAAAGTTGTTAATTAACGACAACTGCCGGAAGAGAAGCAAGCATATTGCATTCTACGCCATTGAGTGCAAGGATTCCTGTGGTGAAATATTTGTTGATTTGCAGAACCATAGCTATGTTCAGAAGGTTGGAGGTGAACCCAAACCAAAGGAGTTGGCATATCCAAGTCTCCAGGAAGCTATCTCCGTACCCTGGAAGAATTTACCAAGAAAAACAACTAAACTGTACTTTGCCATGAGAGTACTGGAGAATTATGAGTCATCTGAAGGCCGCAATGCTTGTGAGGCATCACTTTCTGATCGACCTGCAGTTTTGGCTCTGAGGAAGGACATGTGTGATAAAATGTCTTTAAGTGAGTCTCAAATTCCTACTGCTCTCCTGGAACGGCTTTTAGCAGCTGGAAAGAAGCAACATCCT-CCTGTATGTGCAATCCTTGGCGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACTAATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGTCAATTTAAGTCTGAGAGATACTTAGAACTCTACTATTTGTTATTTAAGTTGTGCCAGCTTAGAAATGGTATCAGATAGAAATTTTTCATTTTGTGCCAACAATTTCAAAGCTGAAACCAGGAAAGGTTTTGTGCTGATTGAAAGATTAAATGTGTTGCTCTGTATTCTCTTCCNNAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGAATGGTTGAC]
[+] EMBL AK111924 [CAAGAACGCCAAAAACCCTCGCTTTGCTGCTGCTCCTCCCCCTTCTCCTTCGGCTGCTGATCGGATTCGCGGCGTCCCAGGCTAGGGATCCGGGCGGTGGCGGCGATGGGCGGCGGCGGCGGCGCGGAGGAGGAGCTGACGGCGCAGGAGACGGCGCTCTACGACCGCCAGATCCGCGTCTGGGGCGTTGACGCCCAGAAGAGGCTAAGTAAAGCTCATGTGCTCGTGTGCGGCATGAATGGTACTACTACTGAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTGATGGATGATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGATGAGAGCATATATGGTGGTAGATCACGAGCTGAGGTTTGCTGTGAGTCCCTGAAAGATTTCAATCCAATGGTCCGAGTTGCAGTCGAAAAGGGTGATCCATCATTAATTGATGGAGAATTCCTTGACAAGTTTGACATAATTGTAGTTAGCTGTGCGCCTATTAAAACAAAGTTGTTAATTAACGACAACTGCCGGAAGAGAAGCAAGCATATTGCATTCTACGCCATTGAGTGCAAGGATTCCTGTGGTGAAATATTTGTTGATTTGCAGAACCATAGCTATGTTCAGAAGGTTGGAGGTGAACCCAAACCAAAGGAGTTGGCATATCCAAGTCTCCAGGAAGCTATCTCCGTACCCTGGAAGAATTTACCAAGAAAAACAACTAAACTGTACTTTGCCATGAGAGTACTGGAGAATTATGAGTCATCTGAAGGCCGCAATGCTTGTGAGGCATCACTTTCTGATCGACCTGCAGTTTTGGCTCTGAGGAAGGACATGTGTGATAAAATGTCTTTAAGTGAGTCTCAAATTCCTACTGCTCTCCTGGAACGGCTTTTAGCAGCTGGAAAGAAGCAACATCCT CCTGTATGTGCAATCCTTGGCGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACTAATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGTCAATTTAAGTCTGAGAGATACTTAGAACTCTACTATTTGTTATTTAAGTTGTGCCAGCTTAGAAATGGTATCAGATAGAAATTTTACATTTTGTGCCAACAATTTCAAAGCTGAAACCAGGAAAGGTTTTGTGCTGATTGAAAGATTAAATGTGTTGCTCTGT ]
[+] EMBL AU225271 [ GCCGCTCGGATTCGCGGCGTCCCAGGCTAGGGATCCGGGCGGTGGCGGCGATGGGCGGCGGCGGCGGCGCGGAGGANGANCTGACGGCGCANGAGACGGCGCTCTACGACCGCCAGATCCGCGTCTGGGGCGTTGACGCCCAGAAGAGGCTAAGTAAAGCTCATGTGCTCGTGTGCGGCATGAATGGTACTACTACTGAGTTCTGCAANAATATTGTTCTAGCAGGAGTTGG ]
[-] EMBL CB669587 [ TGTGGGGAAATATTTGTTGATTTGCAGAACCATAGCTATGTTCAGAAGGTTGGAGGTGAACCCAAACCAAAGGAGTTGGCATATCCAAGTCTCCAGGAAGCTATCTCCGTACCCTGGAAGAATTTACCAAGAAAAACAACTAAACTGTACTTTGCCATGAGAGTACTGGAGAATTATGAGTCATCTGAAGGCCGCAATGCTTGTGAGGCATCACTTTCTGATCGACCTGCAGTTTTGGCTCTGAGGAAGGACATGTGTGATAAAATGTCTTTAAGTGAGTCTCAAATTCCTACTGCTCTCCTGGAACGGCTTTTAGCAGCTGGAAAGAAGCAACATCCT CCTGTATGTGCAATCCTTGGCGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACTAATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGTCAATTTAAGTCTGAGAGATACTTAGAACTTTACGGTTTGTTATTTAAGTTGT CCAGCTTAGAAATGGTATCAGATAGAA ]
[+] EMBL CF330966 [ CAACATCCT CCTGTATGTGCAATCCTTGGCGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACTAATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGTCAATTTAAGTCTGAGAGATACTTAGAACTCTACTATTTGTTATTTAAGTTGTGCCAGCTTAGAAATGGTATCAGATAGAAATTTTTCATTTTGTGCCAACAATTTCAAAGCTGAAACCAGGAAAGGTTTTGTGCTGATTGAAAGATTAAATGTGTTGCTCTGTATTCTCTTCCNNAAAAAAAAAA ]
[-] EMBL CF330967 [ AACATCCTCCCTGTATGTGCAATCCTTGGCGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATCCGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTCCTCCCCTTTCTTCAGATTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCATTAATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGACAATTTAAGTCTGAGAGATACTTAGAACTCTACTATTTGTTATTTAAGTTGTGCCAGCTTAGAAATGGTATCAGATAGAAATTTTTCATTTTGTGCCAACAATTTCAAAGCTGAAACCAGGAAAGGTTTTGTGCTGATTGAAAGATTAAATGTGTTGCTCTGTATTCTCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGAATGGTTGAC]
consensusID : consensus_8916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[AATTGCTCTCTATTTCTCAACGTTTAGGCTCAATTTTCTGTAGATAAATTCTTTCATTTATTTATGCTAGCTTACGTTGTTCCAATATATGTCTATTTATCCTTTTCTTTTACAGTCATATCCCATGATTATCTGATCAATGCACTTCGCTTTGTTAAGAATATGATTGCTATTATACTATTTACTACTTCCTTCGTTTCATATTATAAGACTTTCTGGCATTGCCTACATTCATTAACATCTATATGAATATGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGTAGTTAAAGTATATGCCTTAGAAACTAGATTTCTGTAGTCATAGAGTATCATAAGCAGCTGCATCCTGACTCAATTGTATATTCATCTAGGTACTTAAGTACCTCAGTTCTTCTGGATATATTGATAAAGCTTAACTCATAATCGAAGGCAGCCTTATACACTAAATGCCATTTCTCTCTTACCCTGTAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTGATGGATGATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGATGAGAGCATATATGGTGGTAGATCACGAGCTGAGGTTTGCTGTGAGTCCCTGAAAGATTTCAATCCAATGGTCCGAGTTGCAGTCGAAAAGGGTGAGCCTAGTCTGGTTTTCTTCATTGGTTTGGGTGTCAGAATTAGAAGTACATAAAGTAGGATGCCTTCTTGCATTCTTGAATTGCTCTCGTCCTAATGGTTA]
[+] EMBL CB669586 [AATTGCTCTCTATTTCTCAACGTTTAGGCTCAATTTTCTGTAGATAAATTCTTTCATTTATTTATGCTAGCTTACGTTGTTCCAATATATGTCTATTTATCCTTTTCTTTTACAGTCATATCCCATGATTATCTGATCAATGCACTTCGCTTTGTTAAGAATATGATTGCTATTATACTATTTACTACTTCCTTCGTTTCATATTATAAGACTTTCTGGCATTGCCTACATTCATTAACATCTATATGAATATGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGTAGTTAAAGTATATGCCTTAGAAACTAGATTTCTGTAGTCATAGAGTATCATAAGCAGCTGCATCCTGACTCAATTGTATATTCATCTAGGTACTTAAGTACCTCAGTTCTTCTGGATATATTGATAAAGCTTAACTCATAATCGAAGGCAGCCTTATACACTAAATGCCATTTCTCTCTTACCCTGTAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTGATGGATGATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGATGAGAGCATATATGGTGGTAGATCACGAGCTGAGGTTTGCTGTGAGTCCCTGAAAGATTTCAATCCAATGGTCCGAGTTGCAGTCGAAAAGGGTGAGCCTAGTCTGGTTTTCTTCATTGGTTTGGGTGTCAGAATTAGAAGTACATAAAGTAGGATGCCTTCTTGCATTCTTGAATTGCTCTCGTCCTAATGGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8916#0 CAAGAACGCCAAAAACCCTCGCTTTGCTGCTGCTCCTCCCCCTTCTCCTTCGGCTGCTGA 60
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 TCGGATTCGCGGCGTCCCAGGCTAGGGATCCGGGCGGTGGCGGCGATGGGCGGCGGCGGC 120
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 GGCGCGGAGGAGGAGCTGACGGCGCAGGAGACGGCGCTCTACGACCGCCAGATCCGCGTC 180
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 TGGGGCGTTGACGCCCAGAAGAGGCTAAGTAAAGCTCATGTGCTCGTGTGCGGCATGAAT 240
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 GGTACTACTACTGAGTTCTGCAAGAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTG 300
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 ATGGATGATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGAT 360
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 GAGAGCATATATGGTGGTAGATCACGAGCTGAGGTTTGCTGTGAGTCCCTGAAAGATTTC 420
consensus_8916#1 ------------AATTGCTCTCTATTTCTCAACGTTTAGGCTCAATTTTCTGTAGATA-- 46
* * * * **** * * * ****
consensus_8916#0 AATCCAATGGTCCGAGTTGCAGTCGAAAAGGGTGATCCATCATTAATTGATGGAGAATTC 480
consensus_8916#1 AATTCTTTCATTT-ATTTATGCTAGCTTACGTTGTTCCAATATATGTCTATTTA----TC 101
*** * * * * ** * * * * ** **** ** * ** * **
consensus_8916#0 CTTGACAAGTTTGACATAATTGTAGTTAGCTGTGCGCCTATTAAAACAAAGTTGTTAATT 540
consensus_8916#1 CTTT-----TCTTTTACAGTCATATCCCATGATTATCTGATCAATGCACTTCGCTTTGTT 156
*** * * * * * ** * * ** ** ** ** **
consensus_8916#0 AACGACAACTGCCGGAAGAGAAGCAAGCATATTGCATTCTACGCCATTGAGTGCAAGGAT 600
consensus_8916#1 AAGAATA--TGATTGCTATTATACTA-TTTACTACTTCCTTCGTTTCATATTATAAGACT 213
** * * ** * * * * ** * * * ** ** * * *** *
consensus_8916#0 TCCTGTGGTGAA--ATATTTGTTGA--TTTGCAGAACCATAGCTATGTTCAGAAGGTTGG 656
consensus_8916#1 TTCTGGCATTGCCTACATTCATTAACATCTATATGAATATGGGCAATGCTAGAAAGTCTT 273
* *** * * *** ** * * * * * ** * * **** **
consensus_8916#0 AGGTGAACCCAAACCAAAGGAGTTGGCATATCCAAGTCTCCAGGAAGCTATCTCCGTACC 716
consensus_8916#1 AT---AACCTGAAACGGAGGTAGTAGTTAAAGTATATGCCTTAGAAACTAGATTTCTGTA 330
* **** ** * *** * * * * * * *** *** * *
consensus_8916#0 CTGGAAGAATTTACCAAGAAAAACAACTAAACTGTACTTTGCCATGAGAGTACTGGAGAA 776
consensus_8916#1 GTCATAGAGTATCATAAGC----------AGCTGCATCCTGACTCA-----ATTGTATAT 375
* *** * * *** * *** * ** * * ** * *
consensus_8916#0 TTATG-AGTCATCTGAAGGCCGCAATGCTTGTGAGGCATCACTTTCTGATCGACCTGCAG 835
consensus_8916#1 TCATCTAGGTACTTAAGTACCTCAGTTCTTCTGG------ATATATTGATAAAGCTTAAC 429
* ** ** * * * ** ** * *** ** * * **** * ** *
consensus_8916#0 TTTTGGCTCTGAGGAAGGACATGTGTGATAAAATGTCTTTAAGTGAGTCTCAAATTCCTA 895
consensus_8916#1 TCATAATC--GAAGGCAGCCTTATACACTAAA-TGCCATT---TCTCTCTTA---CCCTG 480
* * ** * * * * * **** ** * ** * *** * ***
consensus_8916#0 CTGCTCTCCTGGAACGGC-TTTTAGCAGCTGGAAAGAAGCAACATCCTCCTGTATGTGCA 954
consensus_8916#1 TAGTTCTGCAAGAATATTGTTCTAGCAG----GAGTTGGCAGT-TTATCCTTGATGGATG 535
* *** * *** ** ****** * *** * **** ***
consensus_8916#0 ATC-CTTGGCGGCATTCT-TGGTCAGGAGGTGATTAAGTCAATATCTGGTAAGGGTGATC 1012
consensus_8916#1 ATCATTTAGTCACAGAGGATGATCTCAATGCAAATTTCTTAATTCCTCATGATGA-GAGC 594
*** ** * ** ** ** * * * * * *** ** * * * ** *
consensus_8916#0 CGATCAAGAATTTCTTCTATTACGACGCCGCTGATGGTAAAGGGATCGCTGAAGACATTC 1072
consensus_8916#1 ATATATGG----TGGTAGATCACGA-GCTGAGGTTTGCTGTGAG-TCCCTGAAAGATTTC 648
** * * * ** **** ** * * * * * * ** ***** ***
consensus_8916#0 CTCCCCTTTCTTCAGACTGAACCAGTTAACTGCTCGACTCCCATTCAGCCTGGCTTCACT 1132
consensus_8916#1 AATCCAATGGTCCGAGTTG---CAGTCGAAAAGGGTGAGCCTAGTCTGGTTTTCTTCATT 705
** * * * ** **** * ** * ** * * ***** *
consensus_8916#0 AATCCCTGTACCCATTAATTAGCTTCAAATTAGATTAGCAGTCAATTTAAGTCTGAGAGA 1192
consensus_8916#1 GGTTTGGGTGTCAG--AATTAGAAGTACATAAAGTAGGATGCCTTCTTGCATTCTTGAAT 763
* ** * ****** * ** * * * * * ** * **
consensus_8916#0 TACTTAGAACTCTACTATTTGTTATTTAAGTTGTGCCAGCTTAGAAATGGTATCAGATAG 1252
consensus_8916#1 TGCTC----TCGTCCTAATGGTTA------------------------------------ 783
* ** * *** * ****
consensus_8916#0 AAATTTTTCATTTTGTGCCAACAATTTCAAAGCTGAAACCAGGAAAGGTTTTGTGCTGAT 1312
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 TGAAAGATTAAATGTGTTGCTCTGTATTCTCTTCCNNAAAAAAAAAAAAAAAAAAAAAAA 1372
consensus_8916#1 ------------------------------------------------------------
consensus_8916#0 AAATGTCATGCCGTTACGTAGCGAATGGTTGAC 1405
consensus_8916#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||