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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1257 fasta sequence
[CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCACGGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGGACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGCCGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATGTGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGGGCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACAAGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGAAGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGGTAAGTTGGTAAGTAGCTACACAATGGACCTCATTAATTAGAATTATTAGCAGATGTTAAATTGTATATGTTCTTATGATACTGCTAACGAAATCTGGAAGTTGGAACTCACGAAAATTTAGACACTCCTAAATTAAGTTGATTCTTACTCCTATGTAAGAGACTGCACACTAATAGAATCAAATTTTATAATTGTTCTTACT]
[+] EMBL AY341859 [CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCACGGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGGACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGCCGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATGTGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGGGCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACAAGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGAAGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGGTAAGTTGGTAAGTAGCTACACAATGGACCTCATTAATTAGAATTATTAGCAGATGTTAAATTGTATATGTTCTTATGATACTGCTAACGAAATCTGGAAGTTGGAACTCACGAAAATTTAGACACTCCTAAATTAAGTTGATTCTTACTCCTATGTAAGAGACTGCACACTAATAGAATCAAATTTTATAATTGTTCTTACT]
consensusID : consensus_8918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1179 fasta sequence
[CCCCCTGTTTATTTTCGGGCCCCCCCCCGACAAGCGCCGCCCCTGAGCAGCCCCGCG-CGCGCGACGCGACGCGAC-GCGAAGAA-GGGCAGAAGAGGCGAGCACCCGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGAT-GCTA-AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC-ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTTGAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTAGGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATGGCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGGTTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTGCTGTAGTATAATGACAACCATTCAACCT]
[+] EMBL BI798784 [CCCCCTGTTTATTTTCGGGCCCCCCCCCGACAAGCGCCGCCCCTGAGCAGCCCCGCG CGCGCGACGCGACGCGAC GCGAAGAA GGGCAGAAGAGGCGAGCACCCGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGAT GCTA CAGTGGAGGAAGTATGGCCAAAA GCCGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGACGGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGC CGGCGTC GCGGC CC CCGTC CGGCGC ACATCCACGGC C GC GCCGTCGCCCTC CCGA CAAATGTCGGCGTTCGTCTC CC CC CCACA CCGCATATGCTGTACGGTTTACCCCGG TGCACCC CCGTCCTCCGAGACC CCGTCAGCTGCTCGAT CCGACGACGACGTCTTTCCAGGA CTG ACAATA ]
[+] EMBL BI799118 [ cgacCGCCGCCCC GAGCAGCGCCGCGTCGCGCGACGCGACGCGACGGCGAAGAAGGGGCAGAAGAGGCGAGCACCCG TCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAAC ATAGCGAGGGGCTACAACGCCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCA ]
[+] EMBL AK069091 [ AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACG CCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTTGAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTAGGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATGGCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGGTTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTGCTGTAGTATAATGACAACCATTCAACCT]
[+] EMBL AU091290 [ AGGANGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCAACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAA ]
[+] EMBL BE230447 [ ATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCAAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8918#0 CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCAC 60
consensus_8918#1 ------------------------------------------------------------
consensus_8918#0 GGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGG 120
consensus_8918#1 ------------------------------------------------------------
consensus_8918#0 ACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGC 180
consensus_8918#1 ------------------------------------------------------------
consensus_8918#0 CGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATG 240
consensus_8918#1 ------------------------------------------------------------
consensus_8918#0 TGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGG 300
consensus_8918#1 ------------------------------------------------------------
consensus_8918#0 GCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACA 360
consensus_8918#1 ------------------------CCCCCTGTTTATTTTCGGGCCCC----CCCCCGACA 32
* * * * ** *** *********
consensus_8918#0 AGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGA 420
consensus_8918#1 AGCG-----CCGCCCCTGAG-CAGCCCC----GCGCGCGCGACG-CGACG-CGACG-CGA 79
**** ***** * *** **** ** *** ****** ***** ***** ***
consensus_8918#0 AGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTG 480
consensus_8918#1 AGAAGGG-CAGAAGAGG-CGAG-CACCC---GTTCGCGTTCATGACCAAGAGCGAGATTG 133
******* ********* **** ** ** *****************************
consensus_8918#0 ACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCC 540
consensus_8918#1 ACCACCTCGAGGATG-CTA-AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCC 191
*************** *** ****************************************
consensus_8918#0 CATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGG 600
consensus_8918#1 CATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGG 251
************************************************************
consensus_8918#0 AGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACC 660
consensus_8918#1 AGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACC 311
************************************************************
consensus_8918#0 ACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCG 720
consensus_8918#1 ACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCG 371
************************************************************
consensus_8918#0 CGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGC 780
consensus_8918#1 CGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGC 431
************************************************************
consensus_8918#0 ATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCT 840
consensus_8918#1 ATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCT 491
************************************************************
consensus_8918#0 CGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCC-T 899
consensus_8918#1 CGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCCT 551
********************************************************** *
consensus_8918#0 GGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCG 959
consensus_8918#1 GGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCG 611
************************************************************
consensus_8918#0 GTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTT 1019
consensus_8918#1 GTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTT 671
************************************************************
consensus_8918#0 AGACTTGGATGACAATACTCAAATATACATGCATGG--TAAGTTGGTA-AGTAGCTACAC 1076
consensus_8918#1 AGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTT 731
*********************************** ** * ** * *** **
consensus_8918#0 AATGG---ACCTCATTAATTAGAATTA------TTAGCAG-ATGTTAAATTGTA----TA 1122
consensus_8918#1 GAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTA 791
* * * ***** ** * ** * **** * * **** **
consensus_8918#0 TGTTCTTATGAT--ACTGCTAACGAAATCTGGA-----AGTTGGAACTCACGAA-----A 1170
consensus_8918#1 GGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATG 851
* * * **** ** ** ****** *** ** ** **
consensus_8918#0 ATTTAGACACTCCTAAATTAAGTTGATT---CTTACTCCTATGTAAGAGA-CTG-CACAC 1225
consensus_8918#1 GCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTAC 911
** ** * * * ** ** *** **** * * * * **** *** * **
consensus_8918#0 TAATAGAATCAAATTTTATAATTGTTCTTACT---------------------------- 1257
consensus_8918#1 AAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGT 971
* * **** * ** * *
consensus_8918#0 ------------------------------------------------------------
consensus_8918#1 GCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATC 1031
consensus_8918#0 ------------------------------------------------------------
consensus_8918#1 TTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGG 1091
consensus_8918#0 ------------------------------------------------------------
consensus_8918#1 TTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTG 1151
consensus_8918#0 ----------------------------
consensus_8918#1 CTGTAGTATAATGACAACCATTCAACCT 1179
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||