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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1219 fasta sequence
[AACGGTAGTGGAGTGTGTGAGTAGCTGAGGAGGTCGACCATGGCGGCGGCTAGGGTTGCGATGTGGGTGGCGTGCGTGTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGGTACTACAAGCGGAAGTGCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACGCCGTCCGCCAGAACCCCGGCGTCGGCGCCGGCATCGTCCGCATGTTCTTCCACGACTGCTTCGTCCAGGGGTGTGACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAGAAGCTCGGCCCACCGAACTTCCCCAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCGAAGGCGGCGGTGGAGAAGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCATCGCGTTCGCGGCGCGCGACGCCTCCTTCTTCCTTAGCGGCGGCGGCATCAGCTACCGCATCCCCGCGGGGAGGCTCGACGGACGCGTCTCCCTCGCCAACGAGACGCTCGCGTTCCTCCCGCCGCCGGTGTTCAACCTCACCCAGCTCGTCGCCAGCTTCCAGGCGAAGGGCCTCGACGCCGACGACATGGTCACCCTCTCCGGCGCGCACACCATCGGCCGCTCCCACTGCTCCTCCTTCGCCGACCGCCTCTCGCCGCCGTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCGGCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGGATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGATATGATCGAATAAAGTTTTTCAGTTTTTAAAAA]
[+] EMBL AK102122 [AACGGTAGTGGAGTGTGTGAGTAGCTGAGGAGGTCGACCATGGCGGCGGCTAGGGTTGCGATGTGGGTGGCGTGCGTGTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGGTACTACAAGCGGAAGTGCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACGCCGTCCGCCAGAACCCCGGCGTCGGCGCCGGCATCGTCCGCATGTTCTTCCACGACTGCTTCGTCCAGGGGTGTGACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAGAAGCTCGGCCCACCGAACTTCCCCAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCGAAGGCGGCGGTGGAGAAGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCATCGCGTTCGCGGCGCGCGACGCCTCCTTCTTCCTTAGCGGCGGCGGCATCAGCTACCGCATCCCCGCGGGGAGGCTCGACGGACGCGTCTCCCTCGCCAACGAGACGCTCGCGTTCCTCCCGCCGCCGGTGTTCAACCTCACCCAGCTCGTCGCCAGCTTCCAGGCGAAGGGCCTCGACGCCGACGACATGGTCACCCTCTCCGGCGCGCACACCATCGGCCGCTCCCACTGCTCCTCCTTCGCCGACCGCCTCTCGCCGCCGTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCGGCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGGATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGATATGATCGAATAAAGTTTTTCAGTTT ]
[+] EMBL AK073381 [AACGGTAGTGGAGTGTGTGAGTAGCTGAGGAGGTCGACCATGGCGGCGGCTAGGGTTGCGATGTGGGTGGCGTGCGTGTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGGTACTACAAGCGGAAGTGCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACGCCGTCCGCCAGAACCCCGGCGTCGGCGCCGGCATCGTCCGCATGTTCTTCCACGACTGCTTCGTCCAGGGGTGTGACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAGAAGCTCGGCCCACCGAACTTCCCCAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCGAAGGCGGCGGTGGAGAAGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCATCGCGTTCGCGGCGCGCGACGCCTCCTTCTTCCTTAGCGGCGGCGGCATCAGCTACCGCATCCCCGCGGGGAGGCTCGACGGACGCGTCTCCCTCGCCAACGAGACGCTCGCGTTCCTCCCGCCGCCGGTGTTCAACCTCACCCAGCTCGTCGCCAGCTTCCAGGCGAAGGGCGTCGACGCCGACGACATGGTCACCCTCTCCGGCGCGCACACCATCGGCCGCTCCCACTGCTCCTCCTTCGCCGACCGCCTCTCGCCGCCGTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCGGCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGGATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGATATGATCGAATAAAGTTTTTCA ]
[+] EMBL AU032428 [ AGTAGCTGAGGAGGTCGACCATGGCGGCGGCTAGGGTTGCGATGTGGGTGGCGTGCGTGTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGGTACTACAAGCGGAAGTGCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACG CGTCCGCCAGAACCCCGGCGTCGGCGCC GCATCGTCCGCATGTTCTTCCACGACTGCTTCGTCCAGGGGTGTGACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAGAAGCTNGG CCACCGAACTTTCCCANCCTGCGGGGGTTCGAag ]
[+] EMBL OSR26581A [ AGGAGGTCGACCATGGCGGCGGCTAGGGTTGCGATGTGGGTGGCGTGCGTTTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGGTACTACAAGCGGAAGTNCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACG CGTNCGCCAGAACCCCGGCGTCGGCGCCGGCATCGTCCGCATGTTCTTCCACGACTGCTTCGTCCAGGGGTGTNACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAGAAGCTCGGCCCACCGAACTTCCCCAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCGAAGGCG ]
[+] EMBL AU031926 [ nCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGNGCGATGGTGAAGATGGNCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGATATGATCGAATAAAGTTTTTCAGTTTTTAAAAA]
consensusID : consensus_8920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[GTCACCTTTCCGGNGCGCACACCATCGGCCGNTCCCACTGCTCCTCCTTCGCCGACCGCCTCTCGCCGCCNTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCGGCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGGATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGAAAAAAAAAAAAAAAAA]
[+] EMBL AU082735 [GTCACCTTTCCGGNGCGCACACCATCGGCCGNTCCCACTGCTCCTCCTTCGCCGACCGCCTCTCGCCGCCNTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCGGCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGGATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCCGCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGGAGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACCGCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCAGAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAAGCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAATGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8920#0 AACGGTAGTGGAGTGTGTGAGTAGCTGAGGAGGTCGACCATGGCGGCGGCTAGGGTTGCG 60
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 ATGTGGGTGGCGTGCGTGTTGGCAATGGCGGCGGCGTGCCAGGGGCGGCTTAGGGTTGGG 120
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 TACTACAAGCGGAAGTGCGCGCCGGCGGAGTACGTCGTCAGGGCCGTCGTCGGCAACGCC 180
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 GTCCGCCAGAACCCCGGCGTCGGCGCCGGCATCGTCCGCATGTTCTTCCACGACTGCTTC 240
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 GTCCAGGGGTGTGACGCGTCGGTGCTGCTCGACCCGACGGCGGCGAACCCGCAGCCGGAG 300
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 AAGCTCGGCCCACCGAACTTCCCCAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCGAAG 360
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 GCGGCGGTGGAGAAGGCCTGCCCGGGCGTCGTCTCCTGCGCCGACATCATCGCGTTCGCG 420
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 GCGCGCGACGCCTCCTTCTTCCTTAGCGGCGGCGGCATCAGCTACCGCATCCCCGCGGGG 480
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 AGGCTCGACGGACGCGTCTCCCTCGCCAACGAGACGCTCGCGTTCCTCCCGCCGCCGGTG 540
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 TTCAACCTCACCCAGCTCGTCGCCAGCTTCCAGGCGAAGGGCCTCGACGCCGACGACATG 600
consensus_8920#1 ------------------------------------------------------------
consensus_8920#0 GTCACCCTCTCCGGCGCGCACACCATCGGCCGCTCCCACTGCTCCTCCTTCGCCGACCGC 660
consensus_8920#1 GTCACC-TTTCCGGNGCGCACACCATCGGCCGNTCCCACTGCTCCTCCTTCGCCGACCGC 59
****** * ***** ***************** ***************************
consensus_8920#0 CTCTCGCCGCCGTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCG 720
consensus_8920#1 CTCTCGCCGCCNTCGGACATGGACCCCGGCCTCGCCGCCGCGCTCCGGAGCAAGTGCCCG 119
*********** ************************************************
consensus_8920#0 GCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGG 780
consensus_8920#1 GCGAGCCCCAACTTCACCGACGACCCGACGGTGGCGCAGGACGCGGTGACGCCGGACAGG 179
************************************************************
consensus_8920#0 ATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCC 840
consensus_8920#1 ATGGACAGGCAGTACTACCGGAACGTGCTCGACAGGAAGGTGCTGTTCGACTCCGACGCC 239
************************************************************
consensus_8920#0 GCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGG 900
consensus_8920#1 GCGCTGCTGGCGTCGCGGCCGACGGCGGCGATGGTGGCGCGGAACGCGGCGGCGCGCGGG 299
************************************************************
consensus_8920#0 AGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACC 960
consensus_8920#1 AGGTGGGAGAGGAGGTTCGCGAGGGCGATGGTGAAGATGGGCGGGATCGAGGTCAAGACC 359
************************************************************
consensus_8920#0 GCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCA 1020
consensus_8920#1 GCCGCCAATGGCGAGATCAGGAGGATGTGCAGGGTTGTCAACGAGTAACTGTTAATTTCA 419
************************************************************
consensus_8920#0 GAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAA 1080
consensus_8920#1 GAGGAGGATGCATCTAGCTACGTACGTGCCATTTTGATTTGTTTTCTTCAGAATTCAGAA 479
************************************************************
consensus_8920#0 GCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAA 1140
consensus_8920#1 GCATGAATTGTCACATTTCAATATTATTTCGTTGCTTGATTCGAGATGATCTGGGGCAAA 539
************************************************************
consensus_8920#0 TGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGATATGATCGAATAAA 1200
consensus_8920#1 TGTTGTATTTGCACCTGACGGAATTAATTGTACGCTCCATTAGAGAAAAAAAAAAAAAAA 599
********************************************** * * ** ***
consensus_8920#0 GTTTTTCAGTTTTTAAAAA 1219
consensus_8920#1 AA----------------- 601
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||