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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1168 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA]
[+] EMBL AK104997 [TTCCTCGAGCACTGTTGGCCTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA]
[+] EMBL AK122069 [ TACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTGTTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAAGAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAGAGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTCCCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAA]
[+] EMBL CB632779 [ TCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCG ]
[+] EMBL CB636092 [ CCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGA ]
consensusID : consensus_8921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[ACTTTCCGGCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGCACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCCGCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGCC]
[+] EMBL CB668976 [ CTTTCCGGCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGCACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCCGCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTGCACACCACATTGCTGAAGCACT ]
[+] EMBL CB669011 [aaaggCCGCCGCGTCGAAAGCAACCACTCCTCCTACTCGACCTCGCGCTCGCTCGCTCGCCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGACGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACCCGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGCACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCGCGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCGTGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCCGCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCGAGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8921#0 --TTCCTCGAGCACTGTTGGC--CTACTGGCTCCTACTCGACCTCGCGCTCGCTCGCTCG 56
consensus_8921#1 ACTTTCCGGCGCGTCGAAAGCAACCACTC-CTCCTACTCGACCTCGCGCTCGCTCGCTCG 59
** * * ** * ** * *** ******************************
consensus_8921#0 CCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGA 116
consensus_8921#1 CCCTACAGGCCACCGCCGCACCAGGGGGGGCAGCGAGCGAGCCCGCGAGGTAGTCGGCGA 119
************************************************************
consensus_8921#0 CGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACC 176
consensus_8921#1 CGACCAGGAGGGGGACTGGGATGGGTTGCTGCGGGTCGTCGCTGCAGGCCGGGACCCACC 179
************************************************************
consensus_8921#0 CGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGTCCTTCTCCCTGAACCAGC 236
consensus_8921#1 CGGAGAAGCCGCCGGGGATGGCGGCGCCGCCGCAGCGCCCGACCTTCTCCCTGAACCAGC 239
***************************************** ******************
consensus_8921#0 ACCAGGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCG 296
consensus_8921#1 ACCATGCGCCGGGGTCGGCGGCGGCGCAGGGCGTGGGGAGAGGGGAGGTCCCGGCGTTCG 299
**** *******************************************************
consensus_8921#0 CGGAGTTCTCGCTGGCGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCG 356
consensus_8921#1 CGGAGTTCTCGCTGGGGGAGCTCCGTGCCGCCACGGGCGGGTTCGCCGCGGAGAACATCG 359
*************** ********************************************
consensus_8921#0 TGTCCGAGAGCGGCGAGAAGGCCCCGAATTTCGTGTACAGGGGCCGCCTCCAGCGCACCC 416
consensus_8921#1 TGTCCGAGAGCGGCGAGAAGGCCCCAAATTTCGTGTACAGGGGCCGCCTCCATCGCACCC 419
************************* ************************** *******
consensus_8921#0 GCCGCGCGATCGCCGTCAAGAAGTTCCCCAAGATGGCGTGGCCCGATCCCAAGCAGTTCG 476
consensus_8921#1 GCCGCGCGATCGCCGTCAAGAAGGTCCCCAAGATGGCGTGGCCCGATCCCGAGCAGTTCG 479
*********************** ************************** *********
consensus_8921#0 AGGAGGAGGCCAAGGGGGTGGGGAAGCTGCGCCACCGCCGCTTGGCGAACCTCATCGGCT 536
consensus_8921#1 AGGAGGAGGCCAAGGGGGTGGGGAAACTGCGCCACCGCCGCTTGGCGAACCTCATCGGCT 539
************************* **********************************
consensus_8921#0 ACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAG 596
consensus_8921#1 ACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAG 599
************************************************************
consensus_8921#0 CCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAAGAGTTG 656
consensus_8921#1 CCAAGCACGTCTTCCATTGGGAAAACCAGACTATCGAATGGGCTATGCGTTTAACAGTTG 659
****************************************************** *****
consensus_8921#0 CACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATG 716
consensus_8921#1 CACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATG 719
************************************************************
consensus_8921#0 ACTTAAATGCATATAGGGTCCTTTTTGATGAGAATGGTGATCCTCGTCTTTCATGCTTTG 776
consensus_8921#1 ACTTAAATGCATATAGGGCC---------------------------------------- 739
****************** *
consensus_8921#0 GCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTC 836
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 CAGAGTATTTGAGAAATGGTAGAGTTACTCCAGAAAGTGTCATATTCAGCTTTGGTACTG 896
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 TTCTCCTCGACCTTCTAAGTGGAAAGCGCATACCTCCTTCCCATGCTCTCGATATGATAA 956
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 GAGGCAAAAACATTCAAGTGCTCTTGGACTCACATTTGGAAGGAAAATACTCTACAGAAG 1016
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 AGGCAACTGCTTTGGTAGATCTTGCTTCTCAGTGTTTACAGTATGAACCTAGGGACCGTC 1076
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 CCAATACAGGAAAGCTGGTCTCCATACTTGATCCTTTGCAAACAAAACTAGAGGTGCCTT 1136
consensus_8921#1 ------------------------------------------------------------
consensus_8921#0 CCTATGAGATGCTTGGCATTCCAAAGCATGAA 1168
consensus_8921#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||