These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1065 fasta sequence [TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC] [+] EMBL AK068037 [TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTC ] [+] EMBL CB665278 [ CTCCAGATTTGCTCCAAGGGTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAGAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTT ] [-] EMBL CB631337 [ tgcaggtgAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGACCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGTTGCTATGATGATGAGAGAAAACGGCAATGTAG ] [-] EMBL CB665279 [ GCATCCTGGACCAGACCCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC] [+] EMBL AK059265 [ TGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACTTTGTCTAATACTATTTCTTAA ] consensusID : consensus_8922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGTATACTATTCTACAGGTGGTAGGATCAGTTCCTGTTTGGATGGTAGGCTGAAACTGGTGCAGTGGGCACCTCTCATCCCCTCCCAGTTCCACATTTTGAAGAAAAAATATATCTTCATCGGTCTTGGGCTAAATTATTCAAGGAATTTTCAGCTCAGCCTGGCACTGTTGGAGAGTAGTAGCAGCATCAGCATGAGCTAAGTTGTCACCAAAGATCCAAATTTTTGCTGTGTTGCTTGGTTCTTGAAGGCAACTATTCATTTAATTGGCTTCTGCTTCTGAGTTCTGAGTTCTGAATAATTGGATGGACATGGATTGCTTGCTCCCCTTTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGC] [+] EMBL CB631336 [CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGTATACTATTCTACAGGTGGTAGGATCAGTTCCTGTTTGGATGGTAGGCTGAAACTGGTGCAGTGGGCACCTCTCATCCCCTCCCAGTTCCACATTTTGAAGAAAAAATATATCTTCATCGGTCTTGGGCTAAATTATTCAAGGAATTTTCAGCTCAGCCTGGCACTGTTGGAGAGTAGTAGCAGCATCAGCATGAGCTAAGTTGTCACCAAAGATCCAAATTTTTGCTGTGTTGCTTGGTTCTTGAAGGCAACTATTCATTTAATTGGCTTCTGCTTCTGAGTTCTGAGTTCTGAATAATTGGATGGACATGGATTGCTTGCTCCCCTTTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8922#0 TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAA 60 consensus_8922#1 ------------------CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAA 42 ****************************************** consensus_8922#0 ATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTG 120 consensus_8922#1 ATGCTCCTCCAGATTTGCTCCAAG-TATACTATTCTA---CAGGTGGTAGGATCA-GTTC 97 ************************ * ** *** * **** * ** ** * * consensus_8922#0 AAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGA 180 consensus_8922#1 CTGTTTGGA--------TGGTAGGCTGAAACTG----GTGCAGTGGGCACCTCTCATCCC 145 * * ** * ****** *** * * * * * * consensus_8922#0 TGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCC 240 consensus_8922#1 CTCCCAGTTCCACATTTTGAAGAAAAAATA----TATCTTCATCGGTCTTGGGCTAA--- 198 ** * ** * * * * * * * * *** * consensus_8922#0 AGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCA 300 consensus_8922#1 ----ATTATTCAAGGAATT--------TTCAGCTCAGCCTGG--CACTGTTGGA-GAGTA 243 *** **** ** ***** ** ***** ** *** * * consensus_8922#0 TCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGT-C 359 consensus_8922#1 GTAGCAGCATCAGCATGAGCTA--AGTT---GTCACCAAAGATCCAAATTTTTGCTGTGT 298 * * **** * ** * * *** * * ** * * ** * ** consensus_8922#0 GGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTC 419 consensus_8922#1 TGCTTGGTTCTTGAAGGCAACTAT--------TCATTTAATTGGCTTCTGC--------T 342 ** * * * ** **** * * * * * *** *** * consensus_8922#0 TCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTC 479 consensus_8922#1 TCTGAGTTCTGAGTTC------TGAATAATTGGATGGACATGGATTGCTT--GCTCCCCT 394 ** * ** * * * ** ** * * *** **** * * * * consensus_8922#0 CGCTCCTCCGACGGGGCAGGCC-GGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCA 538 consensus_8922#1 TTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTG 454 ** * ** * ***** *** ** ** * * *** * consensus_8922#0 GGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAA 598 consensus_8922#1 AAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGA-GAG 513 ** * ** * * ** * * * * * **** *** ** consensus_8922#0 GATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAG 658 consensus_8922#1 ATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGG---CGGCCAGGTGGACAACAAGCTG 570 ** ****** * * * * ** * ** * ** * * consensus_8922#0 GCTTAGTTACTCT-TAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTT 717 consensus_8922#1 ATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATC--CTGGACCAGAAC---- 624 ** * ** ** *** ** * * * **** ** ** * * consensus_8922#0 GCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGA 777 consensus_8922#1 -CGGATGCTCATCAACGAGATCAACCAGAACC----ACGAGTCCCGGGCGCCGGACAACC 679 * * **** * ** ** **** ** * * * * * consensus_8922#0 TGATGAGAGAAAACGGCA--ATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGC 835 consensus_8922#1 TCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTG-TCGTCGGC 738 * * * * **** ** * ** ** * ** * * ** * *** ** consensus_8922#0 CTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGA 895 consensus_8922#1 CT--CTACGCCGACCTCTCGGC-------------------------------------- 758 ** ** * * * ** * consensus_8922#0 GAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCAT 955 consensus_8922#1 ------------------------------------------------------------ consensus_8922#0 CTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTT 1015 consensus_8922#1 ------------------------------------------------------------ consensus_8922#0 ATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC 1065 consensus_8922#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||