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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1840 fasta sequence
[ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGAGCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCAAGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAGCATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCAGCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAAAAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTGTCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTTACG-GTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTCTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCTTCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCAGCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAACCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTTTATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC-TTTAAACCGTGAGTAATGCAGTGCTTGGGGACACTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCCCAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTGGCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAAATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATCGATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAATTTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGAGGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG]
[+] EMBL CB623638 [ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGAGCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCAAGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAGCATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCAGCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAAAAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTGTCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTTACG GTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTCTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCC ]
[+] EMBL CB668905 [ TTTACGCGTTCCATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTTTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCTTCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCAGCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAACCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTTTATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCACTTTTAAACCGTGAGTAAT ]
[+] EMBL CA999325 [ CCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGATGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC TTTAAACCGTGAG ]
[-] EMBL CB668906 [ CCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC TTTAAACCGTGAGTAATGCAGTGCTTGGGGACACTTGTAGCCAACTTAAACTGCGG ]
[-] EMBL CB623639 [ TGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAAGGATGTGGGCAAAATTCTTGTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTGGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTGTATGGGTTAAAGCAC TTTAAACCGTGAGTAATGCAGTGCTGGGGGACACTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCCCAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTGGCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAAATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATCGATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAATTTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGAGGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG]
consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGGATCCCCATCCATCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAAAGCTGGAGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCGGNGAAGTCTTCCCATCAGCATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTAAATCACAGTTGAAAA]
[+] EMBL AU069711 [NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGGATCCCCATCCATCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAAAGCTGGAGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCGGNGAAGTCTTCCCATCAGCATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTAAATCACAGTTGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8927#0 ---ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCA 57
consensus_8927#1 NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGG-GATCCCCATCCA 59
****** ************************************ ************
consensus_8927#0 TCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGT 117
consensus_8927#1 TCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGT 119
********** *************************************************
consensus_8927#0 GAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGA 177
consensus_8927#1 GAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAA--AAGCTGG 177
*************************************************** *** *
consensus_8927#0 GCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCA 237
consensus_8927#1 AGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCC------ 231
* ** * ******************************************
consensus_8927#0 AGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAG 297
consensus_8927#1 -----------------------------------------GGNGAAGTCTTCCCATCAG 250
** * **************
consensus_8927#0 CATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCAT 357
consensus_8927#1 CATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCAT 310
***** ******************************************************
consensus_8927#0 GTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCA 417
consensus_8927#1 GTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTA-AATCACAGTTGAAAA-------- 361
** ********************************* *********** ***
consensus_8927#0 GCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAA 477
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 AAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTG 537
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTT 597
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 ACGGTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCA 657
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCA 717
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGT 777
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 CTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCT 837
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCA 897
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAA 957
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 CCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTT 1017
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGAT 1077
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 ATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAG 1137
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATC 1197
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCA 1257
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGG 1317
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTG 1377
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GAATGATTCTTCTATGGGTTAAAGCACTTTAAACCGTGAGTAATGCAGTGCTTGGGGACA 1437
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 CTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCC 1497
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 CAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTG 1557
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAA 1617
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 ATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATC 1677
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAAT 1737
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGA 1797
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG 1840
consensus_8927#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||