cluster # 8932

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Oryza sativa
cluster # 8932 cluster # 8932 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8932#0 length = 798 sequences # 4

consensus_8932#1 length = 591 sequences # 1
consensus_8932#2 length = 321 sequences # 1

consensusID : consensus_8932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 798
fasta sequence

                              [TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGCAGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCTTCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGCTCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103162             [TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGCAGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCTTCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGCTCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGC                                                                 ]
[+] EMBL AK059587             [                                                                                                                                                                                      ATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGT                                                                                                                                                                                                                              ]
[+] EMBL BI801696             [                                                                                                                                                                                                                                                                                                                                                                                                                   GCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATC ATCTGCTGTTTCTGTCCCTGTGCTAATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTaaaaa                                                                                                                 ]
[+] EMBL AU057922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGCAAGTGCAACCCTTGCAACTGCTAAGAANCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8932#0
TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGC
AGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCT
TCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGC
TCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTC
GACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGA
AAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGC
GTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGC
TGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTG
GCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCC
ATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCT
GTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGT
GTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATC
TAGTACCTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAATAAAAAA
AAAAAAAAAAAAAAAAAA

consensusID : consensus_8932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [GTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTGTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA755910             [GTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTGTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_8932#1
GTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAA
GCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGA
GCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGG
CGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCA
ACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTC
CGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCA
TATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCT
CCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTGTGTGGGNGGGGGGTGGGGAACC
GAATCTGTATCATATCANACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCA
CGAGCTGNCANNNANANNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_8932#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [ACGCTGATGGACAATGGATTCACTGCATGTTGAATGACCGACTGCAACTGATGAAGGGAATGTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCATGCTGCCTTGTGCATGCTTGGAGTTGGCTTGGAGCTGTGATGAGATTTGCAGACAAGATGGTGCTGTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTGGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCG]

[-] EMBL CB965852             [ACGCTGATGGACAATGGATTCACTGCATGTTGAATGACCGACTGCAACTGATGAAGGGAATGTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCATGCTGCCTTGTGCATGCTTGGAGTTGGCTTGGAGCTGTGATGAGATTTGCAGACAAGATGGTGCTGTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTGGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCG]




>consensus_8932#2
ACGCTGATGGACAATGGATTCACTGCATGTTGAATGACCGACTGCAACTGATGAAGGGAA
TGTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCA
TGCTGCCTTGTGCATGCTTGGAGTTGGCTTGGAGCTGTGATGAGATTTGCAGACAAGATG
GTGCTGTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTGGC
GGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTC
GGCGTCGCGCCGGAGAAGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8932#0      TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGC 60
consensus_8932#1      ------------------------------------------------------------
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      AGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCT 120
consensus_8932#1      ------------------------------------------------------------
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      TCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGC 180
consensus_8932#1      ------------------------------------------------------------
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      TCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTC 240
consensus_8932#1      ----------------------------GTCATCTTGAGTTGCTTGAGCTTATAGATTTC 32
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      GACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGA 300
consensus_8932#1      GACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGA 92
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      AAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGC 360
consensus_8932#1      AAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGC 152
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      GTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGC 420
consensus_8932#1      GTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGC 212
consensus_8932#2      ------------------------------------------------------------
                                                                                  

consensus_8932#0      TGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTG 480
consensus_8932#1      TGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTG 272
consensus_8932#2      ---------------------------------------------------------ACG 3
                                                                                 *

consensus_8932#0      GCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCC 540
consensus_8932#1      GCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCC 332
consensus_8932#2      CTGATGGACAATGGATTCACTGCATGTT-GAATGACCGACTG-CAACTGATGAAGGGAAT 61
                         **   **   *  * *  *  ***  *   *   **      * * ** ****    

consensus_8932#0      ATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCT 600
consensus_8932#1      ATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCT 392
consensus_8932#2      GTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCAT 121
                       *       ***  *    ** *  * **     *       *   ** *  ****   *

consensus_8932#0      GTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTC-TGGTATATTAATTTACTGG 659
consensus_8932#1      GTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTC-TGGTATATTAATTTACTGG 451
consensus_8932#2      GCTGCCTTGTGCATGCTTGGAGTTGGCT--TGGAGCTGTGATGAGATTTGCAGACAAGAT 179
                      *   *  **   ** *    *  * ***  ** * ****  **  ** *  *   *    

consensus_8932#0      TGTGTTTGTGTGGGTGGGTGT-----GATCGTATCTGTATCATATCAAACCATGCATGTA 714
consensus_8932#1      TGTGTT-GTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTA 510
consensus_8932#2      GGTGCT-GTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTG 238
                       *** * ***   *  ** *       * *       *       ** * *  *** ** 

consensus_8932#0      TCTATCTAGTAC-CTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAA 773
consensus_8932#1      TCTATCTAGTAC-CTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNN 569
consensus_8932#2      GCGGAAAGATGTACCCTGACCTGGAAGAG-AAGAGCAGCAGCGCCCAGGCCACCGTCGTG 297
                       *       *   *  *  * **   *   * * ** *        *             

consensus_8932#0      TAAAAAAAAAAAAAAAAAAAAAAAA 798
consensus_8932#1      NNNNNNNNNNNNNNNNNNNNNN--- 591
consensus_8932#2      CTCGGCGTCGCGCCGGAGAAGGCG- 321