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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence
[GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTTTGCTGTTAAGAC]
[+] EMBL AK073806 [GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAA ]
[+] EMBL AK062340 [ GCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTTTGCTGTTAAGAC]
consensusID : consensus_8933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CTCGGCTCCTCGCAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTATGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA]
[+] EMBL CA999546 [CTCGGCTCCTCGCAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTATGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA]
consensusID : consensus_8933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[AGCGGTGGCAGAGCATCACGCTCCACCCACCGCCAGCGCCCCGCGCCACCCCTGGTCCGCCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAGCCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTTCGCCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGACTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGGACTGATGTGTGTTGCTGTTTTGTGATGACTAATGATTGATGAA]
[+] EMBL AK063659 [AGCGGTGGCAGAGCATCACGCTCCACCCACCGCCAGCGCCCCGCGCCACCCCTGGTCCGCCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAGCCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTTCGCCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGACTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGGACTGATGTGTGTTGCTGTTTTGTGATGACTAATGATTGATGAA]
consensusID : consensus_8933#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CCAAGCTACGAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGGAAACCTCAAATGCAAGTAGCTGTTTTGTGATTGAACCAAGTACTGTACTGATGGANTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATGGNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075887 [CCAAGCTACGAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGGAAACCTCAAATGCAAGTAGCTGTTTTGTGATTGAACCAAGTACTGTACTGATGGANTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATGGNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8933#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[NCANNCGCCAGCGCCCACCGCCCGGCGCCCGCNCCACCGCTTCTCTGCCGTCCTCTGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCGCCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCTCGCCGCCGCTACCACCACTGACGACGACGCTACAGCCACACCGACGAGC]
[+] EMBL AU100902 [NCANNCGCCAGCGCCCACCGCCCGGCGCCCGCNCCACCGCTTCTCTGCCGTCCTCTGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCGCCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCTCGCCGCCGCTACCACCACTGACGACGACGCTACAGCCACACCGACGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8933#2 ---------------------------------------AGCGGTGGCAGAGCATCACGC 21
consensus_8933#4 ---------------------------------------------------NCANNCGCC 9
consensus_8933#0 GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCT 60
consensus_8933#1 ------------------------------------------------------------
consensus_8933#3 ---------------------------------------------------CCAAGCTAC 9
consensus_8933#2 TCCACCCACCGCCAGCGCCCCGCG-----CCACCCCTGGTCCGCCGTCCTCGGCTCCTCG 76
consensus_8933#4 AGCGCCCACCGCCCGGCGCCCGCN-----CCACCGCTTCTCTGCCGTCCTCTGCTCCTCG 64
consensus_8933#0 AGCGCCCACCGCCCGGCGCCCGCG-----CCACCGCTGGTCCACCGTCCTCGGCTCCTCG 115
consensus_8933#1 ------------------------------------------------CTCGGCTCCTCG 12
consensus_8933#3 GAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGG 69
* * *
consensus_8933#2 CGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAG 136
consensus_8933#4 CGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCG 124
consensus_8933#0 CGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCG 175
consensus_8933#1 CAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCG 72
consensus_8933#3 AAACCTCAAATGCAAG----TAGCTGTTTTGTGATTGAACCAAGT-ACTGTACTGATGGA 124
***** ** * ** ** * ** * * * * ***
consensus_8933#2 CCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTT---CGCCGCCGCTA 193
consensus_8933#4 CCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCT---CGCCGCCGCTA 181
consensus_8933#0 CCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTT---CACCGCCACTA 232
consensus_8933#1 CCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTT---CACCGCCGCTA 129
consensus_8933#3 NTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATG 184
* * * * ** * * * * * * * *
consensus_8933#2 CCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGA 253
consensus_8933#4 CCACCACTGACGACGACGCTACAGCCACACCGACGAGC---------------------- 219
consensus_8933#0 CCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGT 292
consensus_8933#1 CCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGT 189
consensus_8933#3 GNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNA 244
* * * * *** * * ***
consensus_8933#2 CTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 313
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 CGCAGCAGCAGC-AGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 351
consensus_8933#1 C---GCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 246
consensus_8933#3 TAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATT 304
consensus_8933#2 CCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTA 373
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 CCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTA 411
consensus_8933#1 CCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTA 306
consensus_8933#3 TGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTA 364
consensus_8933#2 TGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGG 433
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 TGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGG 471
consensus_8933#1 TGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGG 366
consensus_8933#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 393
consensus_8933#2 ACTGATGTGTGTTGCTGTTTTGTGATGACT--AATGATTGATGAA--------------- 476
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 ATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGAT 531
consensus_8933#1 ATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGAT 426
consensus_8933#3 ------------------------------------------------------------
consensus_8933#2 ------------------------------------------------------------
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 GGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATAT 591
consensus_8933#1 GGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGA 486
consensus_8933#3 ------------------------------------------------------------
consensus_8933#2 ------------------------------------------------------------
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 CTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGT 651
consensus_8933#1 ATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATAT 546
consensus_8933#3 ------------------------------------------------------------
consensus_8933#2 ------------------------------------------------------------
consensus_8933#4 ------------------------------------------------------------
consensus_8933#0 TTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATAT 711
consensus_8933#1 TTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA------------------- 587
consensus_8933#3 ------------------------------------------------------------
consensus_8933#2 ----------------
consensus_8933#4 ----------------
consensus_8933#0 ATTTTGCTGTTAAGAC 727
consensus_8933#1 ----------------
consensus_8933#3 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||