cluster # 8935

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8935 cluster # 8935 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8935#0 length = 672 sequences # 3
consensus_8935#1 length = 551 sequences # 1

consensus_8935#2 length = 471 sequences # 1
consensus_8935#3 length = 238 sequences # 1

consensusID : consensus_8935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 672
fasta sequence

                              [TTTTTTTTTTTTTGAGCAGATACTACTTTTATATATACTCCAA-TATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAAAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTGGCACCCGGACCAATTGGGCGGGGGCGTCTCCCTGCTTGCACGGGGGCGGGGGTTAGGGGCTACATCAGGGCGACGACCGTCAGGATCTCGTTGGGGACGGGGCGAGGCAGCGCGGAGGGGGGAGTGGCGGTGCTTGCACGTCTCGGGCGGGGGTGTGGGAGGAGTGAGGCGGGTGGGAGGCGAGGACGCGTTGCGGGGGCGTGGGTGAGGTGTGGGGTGAGGGTTCTGTGGGTGGGGCGAAGTTGTACCACGTCGACCGGAAGCGGAACGGGCGGGGAGTGGTGCGTG]

[+] EMBL CA761467             [TTTTTTTTTTTTTGAGCAGATACTACTTTTATATATACTCCAA TATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAAAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTGGCACCCGGACCAATTGGGCGGGGGCGTCTCCCTGCTTGCACGGGGGCGGGGGTTAGGGGCTACATCAGGGCGACGACCGTCAGGATCTCGTTGGGGACGGGGCGAGGCAGCGCGGAGGGGGGAGTGGCGGTGCTTGCACGTCTCGGGCGGGGGTGTGGGAGGAGTGAGGCGGGTGGGAGGCGAGGACGCGTTGCGGGGGCGTGGGTGAGGTGTGGGGTGAGGGTTCTGTGGGTGGGGCGAAGTTGTACCACGTCGACCGGAAGCGGAACGGGCGGGGAGTGGTGCGTG]
[+] EMBL CA761428             [TTTTTTTTTTTTTGAGCAGATACTACTTTTATATATACTCCAA TATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAAAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTGGCACCCGGACCAATTGGGCGGGGGCGTCTCCCTGCTTGCACGGGGGCGGGGGTTAGGGGCTACATCAGGGCGACGACCGTCAGGATCTCGTTGGGGACGGGGCGAGGCAGCGCGGAGGGGGGAGTGGCGGTGCTTGCACGTCTCGGGCGGGGGTGTGGGAGGAGTGAGGCGGGTGGGAGGCGAGGACGCGTTGCGGGGGCGTGGGTGAGGTGTGGGGTGAGGGTTCTGTGGGTGGGGCGAAGTTGTACCACGTCGACCGGAAGCGGAACGGGCGGGGAGTGGTGCGTG]
[-] EMBL BI803554             [        TTTTTGAGCAGATACTACTTTTATATATACTCCAAGTATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTG GTTAGATGCCTGCTGGTTTATTTATTTG TTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_8935#0
TTTTTTTTTTTTTGAGCAGATACTACTTTTATATATACTCCAATATGGAAAGCATACAGA
GGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTA
TTTGTTTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTA
ATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTA
GCAAAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAG
GGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAG
GTTGGATCCAATACTGAACCCTTGGCACCCGGACCAATTGGGCGGGGGCGTCTCCCTGCT
TGCACGGGGGCGGGGGTTAGGGGCTACATCAGGGCGACGACCGTCAGGATCTCGTTGGGG
ACGGGGCGAGGCAGCGCGGAGGGGGGAGTGGCGGTGCTTGCACGTCTCGGGCGGGGGTGT
GGGAGGAGTGAGGCGGGTGGGAGGCGAGGACGCGTTGCGGGGGCGTGGGTGAGGTGTGGG
GTGAGGGTTCTGTGGGTGGGGCGAAGTTGTACCACGTCGACCGGAAGCGGAACGGGCGGG
GAGTGGTGCGTG

consensusID : consensus_8935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [ATACTACTTTTATATATACTCCAATATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGACATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCAATTGCCGCCGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCGTGCTTTGTCATCTCTAACTTGGTATTAACTCTGACTGAAACTGCATGCACCTCCTGG]

[-] EMBL CA763962             [ATACTACTTTTATATATACTCCAATATGGAAAGCATACAGAGGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGACATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCAATTGCCGCCGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCGTGCTTTGTCATCTCTAACTTGGTATTAACTCTGACTGAAACTGCATGCACCTCCTGG]




>consensus_8935#1
ATACTACTTTTATATATACTCCAATATGGAAAGCATACAGAGGAATTAAAAGACACCTAC
TCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTTGTATATATAGAC
ATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATCG
AGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGGAGTGTGG
GTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGC
CGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAAC
CCTTCCCACCCCCACCAATTGCCGCCGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCA
GGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAA
AACTGGAGCTGCCGTGCTTTGTCATCTCTAACTTGGTATTAACTCTGACTGAAACTGCAT
GCACCTCCTGG

consensusID : consensus_8935#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [CACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTCGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATAGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCTAATAGCCGCCGCCGCTCTCCCTCCTTGCGCGGAGGCAGTGTGCAGGGTGCAGATGAGGGTGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTAAAAGGAACT]

[-] EMBL CB617921             [CACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTCGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAATGAGATAGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCTAATAGCCGCCGCCGCTCTCCCTCCTTGCGCGGAGGCAGTGTGCAGGGTGCAGATGAGGGTGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTAAAAGGAACT]




>consensus_8935#2
CACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTATTTGTTCGTATA
TATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTAATTTTAGATAAT
GAGATAGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTAGCAGAGAGATGG
AGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAGGGTCCGCGGCAT
CCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAGGTTGGATCCAAT
ACTGAACCCTTCCCACCCCCACCTAATAGCCGCCGCCGCTCTCCCTCCTTGCGCGGAGGC
AGTGTGCAGGGTGCAGATGAGGGTGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGC
ACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTAAAAGGAACT

consensusID : consensus_8935#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [CCGGTGTAAGACCCGCCGGGGGTCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCAATTGCCGCAGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTTGGTATTATCTCTTCTTCTCTCCTCTA]

[-] EMBL CB000862             [CCGGTGTAAGACCCGCCGGGGGTCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCCTTCCCACCCCCACCAATTGCCGCAGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTTGGTATTATCTCTTCTTCTCTCCTCTA]




>consensus_8935#3
CCGGTGTAAGACCCGCCGGGGGTCGTCGGCGGCGTGTAGGTTGGATCCAATACTGAACCC
TTCCCACCCCCACCAATTGCCGCAGCCGCTCTCCCTCCTTGCACGGAGGCAGTGTGCAGG
GTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCAAAGGGACAGAGCACCACCAAAA
CTGGAGCTGCCATGCTTTGTCATCTCTAACTTGGTATTATCTCTTCTTCTCTCCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8935#1      -------------------ATACTACTTTTATATATACTCCAATATGGAAAGCATACAGA 41
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      ------------------------------------------------------------
consensus_8935#0      TTTTTTTTTTTTTGAGCAGATACTACTTTTATATATACTCCAATATGGAAAGCATACAGA 60
                                                                                  

consensus_8935#1      GGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTA 101
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      ------------CACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTA 48
consensus_8935#0      GGAATTAAAAGACACCTACTCGATCCATCGATCTGCGTTAGATGCCTGCTGGTTTATTTA 120
                                                                                  

consensus_8935#1      TTTGTTTGTATATATAGACATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTA 161
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      TTTGTTCGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTA 108
consensus_8935#0      TTTGTTTGTATATATAGGCATAGCATCGATCGACATGAGTAGATCGAGATCGATACTTTA 180
                                                                                  

consensus_8935#1      ATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTA 221
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      ATTTTAGATAATGAGATAGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTA 168
consensus_8935#0      ATTTTAGATAATGAGATCGAGATCGATATGGTCTTCGATCATGCAGTAGCACTGTATGTA 240
                                                                                  

consensus_8935#1      GCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAG 281
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      GCAGAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAG 228
consensus_8935#0      GCAAAGAGATGGAGTGTGGGTTATGGTCATGGCGAGCCTGCTCCAGGAGGGCATCTGTAG 300
                                                                                  

consensus_8935#1      GGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAG 341
consensus_8935#3      ---------------------CCGGTGTAAGACCCGCCGGGGGTCGTCGGCGGCGTGTAG 39
consensus_8935#2      GGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAG 288
consensus_8935#0      GGTCCGCGGCATCCCCGGCCGCCGGTGTAAGACCCGCCGGGGGGCGTCGGCGGCGTGTAG 360
                                           ********************** ****************

consensus_8935#1      GTTGGATCCAATACTGAACCCTTCCCACCCCCACC-AATTGCCGCCGCCGCTCTCCCTCC 400
consensus_8935#3      GTTGGATCCAATACTGAACCCTTCCCACCCCCACC-AATTGCCGCAGCCGCTCTCCCTCC 98
consensus_8935#2      GTTGGATCCAATACTGAACCCTTCCCACCCCCACCTAATAGCCGCCGCCGCTCTCCCTCC 348
consensus_8935#0      GTTGGATCCAATACTGAACCCTTGGCACCCGGACCAATTGGGCGGGGGCG-TCTCCCTGC 419
                      ***********************  *****  *** * * * **  * ** ******* *

consensus_8935#1      TTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCA 460
consensus_8935#3      TTGCACGGAGGCAGTGTGCAGGGTGCAGATGAGGGCGAGGACCATCAAGATCACCTTGCA 158
consensus_8935#2      TTGCGCGGAGGCAGTGTGCAGGGTGCAGATGAGGGTGAGGACCATCAAGATCACCTTGCA 408
consensus_8935#0      TTGCACGGGGGCGGGGGTTAGGGGCTACATCAGGGCGACGACCGTCAGGATCTCGTTGGG 479
                      **** *** *** * *   ****   * ** **** ** **** *** **** * ***  

consensus_8935#1      AA-GGGACAGAGCACCACCAAAACTGGAGCTGCCGTGCTTTGTCATCTCTAACTTGGTAT 519
consensus_8935#3      AA-GGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTTGGTAT 217
consensus_8935#2      AA-GGGACAGAGCACCACCAAAACTGGAGCTGCCATGCTTTGTCATCTCTAACTAAAAGG 467
consensus_8935#0      GACGGGGCGAGGCAGCGCGGAGGGGGGAGTGGCGGTGCTTGCACGTCTCGGGCGGGGGTG 539
                       * *** *   *** * *  *    ****  **  *****   * ****   *       

consensus_8935#1      TAACTCTGACTGAAACTGCATGCACCTCCTGG---------------------------- 551
consensus_8935#3      TATCTCTTCTTCTCTCCTCTA--------------------------------------- 238
consensus_8935#2      AACT-------------------------------------------------------- 471
consensus_8935#0      TGGGAGGAGTGAGGCGGGTGGGAGGCGAGGACGCGTTGCGGGGGCGTGGGTGAGGTGTGG 599
                                                                                  

consensus_8935#1      ------------------------------------------------------------
consensus_8935#3      ------------------------------------------------------------
consensus_8935#2      ------------------------------------------------------------
consensus_8935#0      GGTGAGGGTTCTGTGGGTGGGGCGAAGTTGTACCACGTCGACCGGAAGCGGAACGGGCGG 659
                                                                                  

consensus_8935#1      -------------
consensus_8935#3      -------------
consensus_8935#2      -------------
consensus_8935#0      GGAGTGGTGCGTG 672