cluster # 8937

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Oryza sativa
cluster # 8937 cluster # 8937 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8937#0 length = 476 sequences # 3

consensus_8937#1 length = 415 sequences # 2
consensus_8937#2 length = 409 sequences # 1

consensusID : consensus_8937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 476
fasta sequence

                              [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG-CCCTGAACTGGACTGCTGGACCGGTGGGCGA-CCTGAA--GCCTTGGTAGCATGCATC-TCACTGCCTATA-GAAATGT-AAAAAC-TTTTTT-GAAAAA-GATATATTTACAGACAT-GATATAT-AC-TTGCGGCTTGAGATCANCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTGGATCTTTTNCCTGATAAGTATATACNTATATCTTANTCCTTT]

[+] EMBL OSR28781A            [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG CCCTGAACTGGACTGCTGGACCGGTGGGCGA CCTGAA  GCCTTGGTAGCATGCATC TCACTGCCTATA GAAATGT AAAAAC TTTTTT GAAAAA GATATATTTACAGACAT GATATAT AC TTGCGCCTTGAGATCANCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTGGATCTTTTNCCTGATAAGTATATACNTATATCTTANTCCTTT]
[+] EMBL OSR3208A             [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG CCCTGAACTGGACTGCTGGACCGGTGGGCGA CCTGAA  GCCTTGGTAGCATGCATC TCACTGCCTATA GAAATGT AAAAACTTTTTTT GAAAAA GATATATTTACAGACAT GATATAT AC TTGCGGCTTGAGATCACCATGGTTGCA                                                                               ]
[+] EMBL OSR17101A            [                                                 TCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCCTGAACTGGACTGCTGGACCGGTGGGCGACCCTGAAAGGCCTTGGTAGNATGCATCTTCACTGCCTATAGGAAATGTAAAAAAC TTTTTTGGAAAAAGGATATATTTACAGGCATGGATATATNACTTTGCGG                                                                                                    ]




>consensus_8937#0
ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGG
ACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGA
ACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCC
ATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGC
CCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGC
ATGCATCTCACTGCCTATAGAAATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACA
TGATATATACTTGCGGCTTGAGATCANCATGGTTGCATAGTGCTGACCATAAATCAACAA
ATGTACATTTTTTGGATCTTTTNCCTGATAAGTATATACNTATATCTTANTCCTTT

consensusID : consensus_8937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [AAAAAAGCTTGCGGCCGCAAGCTTCCACATGGTGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGCATGCATCTCACTGCCTATAGAGATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGCTTGCGCCGCCCCGC]

[-] EMBL OSA420714            [AAAAAAGCTTGCGGCCGCAAGCTTCCACATGGTGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGCATGCATCTCACTGCCTATAGAGATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGCTTGCGCCGCCCCGC]
[+] EMBL CA766482             [                                                                                                                                                              TATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATT                                    ]




>consensus_8937#1
AAAAAAGCTTGCGGCCGCAAGCTTCCACATGGTGAAAACGTCTTCTTGAAGCCCGGGGAG
AGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGCATGCATCT
CACTGCCTATAGAGATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACATGATATAT
ACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACAT
TGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCA
TTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATC
ATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGCTTGCGCCGCCCCGC

consensusID : consensus_8937#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGAANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGCCCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATATATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGACATAAAAA]

[+] EMBL AU032020             [GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGAANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGCCCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATATATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGACATAAAAA]




>consensus_8937#2
GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGAANCCCCGGGGAGTGGNCC
CTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGCCCTTGGTAGCATGCATCT
CACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATATATTTACAGACATGNTATA
TACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNATAAATCAACAAATGTACA
TTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCC
ATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATATATGTGGATAACTGGATAT
CATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGACATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8937#1      ------------------------------------------------------------
consensus_8937#2      ------------------------------------------------------------
consensus_8937#0      ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGG 60
                                                                                  

consensus_8937#1      ------------------------------------------------------------
consensus_8937#2      ------------------------------------------------------------
consensus_8937#0      ACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGA 120
                                                                                  

consensus_8937#1      ------------------------------------------------------------
consensus_8937#2      ------------------------------------------------------------
consensus_8937#0      ACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCC 180
                                                                                  

consensus_8937#1      --------AAAAAAGCTTGCGGCCGCAAGCTTCC-ACATGGT-GAAAACGTCTTC-TTGA 49
consensus_8937#2      ------------------GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGA 42
consensus_8937#0      ATCAGATACTGAATGGTCTCGCTCGCAAGCTTCC-ACATGGC-GAAAACGTCTTC-TTGA 237
                                         *     **** **** ** ***  ****** ***** ****

consensus_8937#1      AGCCC-GGGGAGAGGGCCCTGAACT--GGACTGCTGGACC--GGTGGGCGACCTGAAG-- 102
consensus_8937#2      ANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGC 102
consensus_8937#0      AGCCC-GGGGAGAGGGCCCTGAACT--GGACTGCTGGACC--GGTGGGCGACCTGAAG-- 290
                      * *** ****** ** ***** *    * ********* *  * ** *** ******   

consensus_8937#1      CCTTGGTAGCATGCATCTCACTGCC-TATAGAGATGTAAAAACTTTTTTGAAAAAGATAT 161
consensus_8937#2      CCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATAT 162
consensus_8937#0      CCTTGGTAGCATGCATCTCACTGCC-TATAGAAATGTAAAAACTTTTTTGAAAAAGATAT 349
                      ************************* ****** ******************** ******

consensus_8937#1      ATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCA 221
consensus_8937#2      ATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNA 222
consensus_8937#0      ATTTACAGACATGATATATACTTGCGGCTTGAGATCANCATGGTTGCATAGTGCTGACCA 409
                      ************* ************ ******* ** *********** ******** *

consensus_8937#1      TAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATC 281
consensus_8937#2      TAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATC 282
consensus_8937#0      TAAATCAACAAATGTACATT-TTTTGGATCTTTTNCC-TGATAAGTATATACN-TATATC 466
                      ******************** ***** ******* ** *****  *******  ******

consensus_8937#1      TTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATAT 341
consensus_8937#2      TTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATAT 342
consensus_8937#0      TT-ANTCCTTT------------------------------------------------- 476
                      ** * ******                                                 

consensus_8937#1      ATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGC 401
consensus_8937#2      ATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGAC 402
consensus_8937#0      ------------------------------------------------------------
                                                                                  

consensus_8937#1      TTGCGCCGCCCCGC 415
consensus_8937#2      ATAAAAA------- 409
consensus_8937#0      --------------