These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [ATATAAGGGATTTTGAGTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTCTCCCTTTTTTAAAAAAGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAAGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGGGGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAAAAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAAGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTTTTTTGCCCCCCCGGGG] [+] EMBL CF307997 [ATATAAGGGATTTTGAGTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTCTCCCTTTTTTAAAAAAGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAAGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGGGGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAAAAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAAGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTTTTTTGCCCCCCCGGGG] consensusID : consensus_8938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAACCAAAACCATAGTTTTTATGGACAAAACCCCAGGTTAAGTTTCTACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACTCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGGGGGGCCCCCGGGCCCAAGTTTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTAAAACCGGGGGGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTTC] [+] EMBL CF316080 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAACCAAAACCATAGTTTTTATGGACAAAACCCCAGGTTAAGTTTCTACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACTCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCCCGGGCCCAAATTTTTACCCCTTAAACCCAGGGGGGGGCCCCCGGGCCCAAGTTTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTAAAACCGGGGGGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTTC] consensusID : consensus_8938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAACTTGTTTTTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCCCCAATTTCCTCCCAATACCCCCCCCCCTTTTACAGCCTTCTCCTTTAATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTTTTGGGGGGGGTAATTTTGACCTTGGGGGAAACATGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGGGGGGCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC] [+] EMBL CF301726 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAACTTGTTTTTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCCCCAATTTCCTCCCAATACCCCCCCCCCTTTTACAGCCTTCTCCTTTAATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTTTTGGGGGGGGTAATTTTGACCTTGGGGGAAACATGGGCAAAACTGTTTCCCGGGGGAAAATGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGGGGGGCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC] consensusID : consensus_8938#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCTAACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAGCGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTTCAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA] [+] EMBL CF317428 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCTAACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAGCGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTTCAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA] consensusID : consensus_8938#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTTTCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCAAGGGCAAATTCT] [+] EMBL CF302800 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTTTCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCAAGGGCAAATTCT] consensusID : consensus_8938#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTTCTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA] [+] EMBL CF331353 [AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTTCTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8938#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 50 consensus_8938#2 --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 48 consensus_8938#0 ---------------------------ATATAAGGGATTTTGAGTTTTTT---------- 23 consensus_8938#5 --AGAACCTCCTGTAGCTTACTTACTAGTTTGTGATGCTTGCTGTATTTT---------- 48 consensus_8938#4 ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------- 41 consensus_8938#3 ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAA 54 * * ** * **** consensus_8938#1 -TTTTTTTTTTTTTTTTTTTTAAAAAAAAACC----------AAAACCATAG-TTT--TT 96 consensus_8938#2 -TTTTTTTTTTTTTTTTTTTTGAAAAAAACCTCCCTTTTAAAAAAATTTCAA-CTTGTTT 106 consensus_8938#0 -TTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAA 81 consensus_8938#5 -CTTCTAGTTCTTGGCTTGGTCTTAAGGAGTTTTTGATTAAAAAAAAAAAAA-AAAAAAA 106 consensus_8938#4 -TTTTCAAAAAAAAATTCCTTCCAAATCTCCCCTC------AAATGATCCAA-ATCCCCA 93 consensus_8938#3 ATCTTATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATCACTGTCT 114 * ** * * consensus_8938#1 ATGGACAAAACCCCAGGTTAAGTTTCTACCCC--TTAAACCCAGGGAAGGGCCCCCGGGC 154 consensus_8938#2 TTTACCTCGGGTCCCTTTTAAGCCCGGGCCCCAATTAAAAGGGGGTGCGGGGGCCCCTCC 166 consensus_8938#0 AAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTT 141 consensus_8938#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA------------ 154 consensus_8938#4 GGGGCCCCAACAAGCGTTCAATTTTGCATGCAGTTGGGTCATATCACAAAGGTTTTAGGT 153 consensus_8938#3 AACCCAACCCAAAAAAACTGGGCCTAAATAAAATTCAAACCGTCGCCAGCACCCCCATAG 174 consensus_8938#1 CCAAATT-TTTACTCCTTA-AACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTACCCCTT 212 consensus_8938#2 CCAA----TTTCCTCCCAA-TACCC---------CCCCCCCTTTTACAGCCTTCTCCTTT 212 consensus_8938#0 TTCTCCC-TTTTTTAAAAA-AGGGGAAATTTGGGGGCCTTAAATTAAATTCCCCCTTTAA 199 consensus_8938#5 ------------------------------------------------------------ consensus_8938#4 CCAGGAA-TGTTTTCATGGGTGGCCAATCGATCGATGATCTTCTTCAAATCTTCCCCTTT 212 consensus_8938#3 CGAAAAAAAATGGCCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCAT 234 consensus_8938#1 AAACCCAGGGAAAGGGCCCCGGGCCCCAATTTTAACCCCTTAAAACCATGGAAGGGGCCC 272 consensus_8938#2 AATCCCTTTTAGGGGCCCAGGGGGAATTTTTTTAAACCCGCGGGACTTTCCCCTT--TTG 270 consensus_8938#0 GGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTAAAAACCTTGGAATGGGAAAAACCCGGG 259 consensus_8938#5 ------------------------------------------------------------ consensus_8938#4 ----TCCAAAAAACGTTGGATCCGCCCTTGTCCTACTCCTTCAGCCCATGTCAGGGCCCA 268 consensus_8938#3 GACCCCACAGAAAAACAGAAACTTAAACCGAATAAACCCCTAAAACTCAACTTGTATTTT 294 consensus_8938#1 CGGGCCCAAATTTTTACCCCTT------AAACCCAGGGGGG---GGCCCCCGGGCCCAAG 323 consensus_8938#2 GGGGGGGTAATTTTGACCTTGGGGG---AAACATGGGCAAAACTGTTTCCCGGGGGAAAA 327 consensus_8938#0 GGTTCCCAAAATAAAACGGCTTGGAACAAACCCCCTTTTCCCCAGGGGGGTTAAAAAAAA 319 consensus_8938#5 ------------------------------------------------------------ consensus_8938#4 AGGGCAAATTCT------------------------------------------------ 280 consensus_8938#3 CAGGAATATGAAACAAAAACCCCCTAAGGGTTTGCGTGTTGAAACATGCCTAATCCCCA- 353 consensus_8938#1 T-TTTTACCCCTTAAAACCATGTGAGGGGCCAAGGGGAAATTTTTTA----AAACCGGGG 378 consensus_8938#2 TGTTTTCCCCCCCCAATTCCCCCCAAAATTCAAGCCGGAAACATAAAGGGGAAACCCCGG 387 consensus_8938#0 AAAAGCCCCCCCCTATCCCCTTTCCAAAAAATTGCCCCCCCTTTTCCTCGGGGGTTTAAA 379 consensus_8938#5 ------------------------------------------------------------ consensus_8938#4 ------------------------------------------------------------ consensus_8938#3 ------------------------------------------------------------ consensus_8938#1 GGAATAGCCCCTTAAGGGGGGGGAAATTTTGACCTGGGGGAAAAAAGGGGAAAAACGGTT 438 consensus_8938#2 GGG---GCCCAATGGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCC------------ 432 consensus_8938#0 GGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCTTTTTTTGGGGTTTCCCAAAGGTTTTT 439 consensus_8938#5 ------------------------------------------------------------ consensus_8938#4 ------------------------------------------------------------ consensus_8938#3 ------------------------------------------------------------ consensus_8938#1 C--------------- 439 consensus_8938#2 ---------------- consensus_8938#0 TTTTGCCCCCCCGGGG 455 consensus_8938#5 ---------------- consensus_8938#4 ---------------- consensus_8938#3 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||